RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 CACNA1GO43497 2377 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 FAM170AA1A519 330 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 C1QTNF9BB2RNN3 333 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 F8VP50 259 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 SGK1O00141 431 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 KRT86O43790 486 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 CALB1P05937 261 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 PROS1P07225 676 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 C1QTNF9P0C862 333 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 MYBL1P10243 752 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 ABCB4P21439 1286 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 CDH5P33151 784 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-208ENST00000437607 NOVA1P51513 510 aaKnown RBP12.69□□□□□ -0.38
PTPRF-208ENST00000437607 KIF5AQ12840 1032 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 DHCR24Q15392 516 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 USP39Q53GS9 565 aaKnown RBP12.69□□□□□ -0.38
PTPRF-208ENST00000437607 ACAD10Q6JQN1 1059 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 RHBDF2Q6PJF5 856 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 CCAR2Q8N163 923 aaKnown RBP12.69□□□□□ -0.38
PTPRF-208ENST00000437607 PHTF2Q8N3S3 785 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 FRMD1Q8N878 549 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 PPP1R13BQ96KQ4 1090 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 HNRNPABQ99729 332 aaKnown RBP12.69□□□□□ -0.38
PTPRF-208ENST00000437607 C11orf70Q9BRQ4 267 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 TMEM121BQ9BXQ6 578 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-208ENST00000437607 MIS12Q9H081 205 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 ZDHHC4Q9NPG8 344 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 TRMT1Q9NXH9 659 aaKnown RBP12.69□□□□□ -0.38
PTPRF-208ENST00000437607 TAS2R14Q9NYV8 317 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 INTUQ9ULD6 942 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 PTPRBP23467 1997 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 PLXNB3Q9ULL4 1909 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 A0A0A0MRY4 1105 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 ANKRD62A6NC57 917 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 TRIM66O15016 1216 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 AP1G2O75843 785 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 TOP3BO95985 862 aaKnown RBP12.68□□□□□ -0.38
PTPRF-208ENST00000437607 FTLP02792 175 aaPredicted RBP12.68□□□□□ -0.38
PTPRF-208ENST00000437607 TMEM253P0C7T8 217 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 UNGP13051 313 aaPredicted RBP12.68□□□□□ -0.38
PTPRF-208ENST00000437607 KIR2DL1P43626 348 aaPredicted RBP12.68□□□□□ -0.38
PTPRF-208ENST00000437607 SNX16P57768 344 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 IRX4P78413 519 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 MRPS21P82921 87 aaKnown RBP12.68□□□□□ -0.38
PTPRF-208ENST00000437607 C1QBPQ07021 282 aaKnown RBP12.68□□□□□ -0.38
PTPRF-208ENST00000437607 TAF10Q12962 218 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 PDCLQ13371 301 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 SH3PXD2AQ5TCZ1 1133 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 EMC10Q5UCC4 262 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 MMS22LQ6ZRQ5 1243 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 MON1BQ7L1V2 547 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 TTC30AQ86WT1 665 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 FUKQ8N0W3 1084 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 C17orf53Q8N3J3 647 aaPredicted RBP12.68□□□□□ -0.38
PTPRF-208ENST00000437607 ALLCQ8N6M5 410 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 KIAA1958Q8N8K9 716 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 IL17RCQ8NAC3 791 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 ANKRD52Q8NB46 1076 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 CCDC26Q8TAB7 109 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 UBA3Q8TBC4 463 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 RLN3Q8WXF3 142 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 CPA5Q8WXQ8 436 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 RFFLQ8WZ73 363 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 C8orf48Q96LL4 319 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 PACSIN1Q9BY11 444 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 ISCUQ9H1K1 167 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 DMAP1Q9NPF5 467 aaPredicted RBP12.68□□□□□ -0.38
PTPRF-208ENST00000437607 TMEM9BQ9NQ34 198 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 LZTFL1Q9NQ48 299 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 ST7Q9NRC1 585 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 SMPD4Q9NXE4 827 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.68□□□□□ -0.38
PTPRF-208ENST00000437607 ADAM22Q9P0K1 906 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 MBD1Q9UIS9 605 aaPredicted RBP12.68□□□□□ -0.38
PTPRF-208ENST00000437607 STRIP2Q9ULQ0 834 aa12.68□□□□□ -0.38
PTPRF-208ENST00000437607 ANKRD11Q6UB99 2663 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-208ENST00000437607 ESPNB1AK53 854 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 CLDN5O00501 218 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 XPO1O14980 1071 aaKnown RBP12.67□□□□□ -0.38
PTPRF-208ENST00000437607 KHNYNO15037 678 aaKnown RBP12.67□□□□□ -0.38
PTPRF-208ENST00000437607 ADAM23O75077 832 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 SPINK2P20155 84 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 TIE1P35590 1138 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 P2RY2P41231 377 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 PPP3CCP48454 512 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 DHPSP49366 369 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-208ENST00000437607 GALCP54803 685 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 PDE4CQ08493 712 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 ZNF252P-AS1Q0IIN9 211 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 PTPN20Q4JDL3 420 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 CYP2U1Q7Z449 544 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 C11orf74Q86VG3 221 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 ERICH1Q86X53 443 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 PHF13Q86YI8 300 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-208ENST00000437607 TXNDC5Q8NBS9 432 aaKnown RBP12.67□□□□□ -0.38
PTPRF-208ENST00000437607 ZFRQ96KR1 1074 aaKnown RBP12.67□□□□□ -0.38
PTPRF-208ENST00000437607 PNKPQ96T60 521 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 B3GNT5Q9BYG0 378 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 KCND1Q9NSA2 647 aa12.67□□□□□ -0.38
PTPRF-208ENST00000437607 TMEM74BQ9NUR3 256 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms