RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 GLT1D1Q96MS3 346 aa9.79□□□□□ -0.84
CUX1-206ENST00000437600 CYTH2Q99418 400 aa9.79□□□□□ -0.84
CUX1-206ENST00000437600 RXFP1Q9HBX9 757 aa9.79□□□□□ -0.84
CUX1-206ENST00000437600 STARD7Q9NQZ5 370 aa9.79□□□□□ -0.84
CUX1-206ENST00000437600 ARMCX1Q9P291 453 aa9.79□□□□□ -0.84
CUX1-206ENST00000437600 TTC3P53804 2025 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 MGRN1O60291 552 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 DNAJC8O75937 253 aaPredicted RBP9.78□□□□□ -0.84
CUX1-206ENST00000437600 CSH1P0DML2 217 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 CSH2P0DML3 217 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 HSPA1AP0DMV8 641 aaKnown RBP9.78□□□□□ -0.84
CUX1-206ENST00000437600 HSPA1BP0DMV9 641 aaKnown RBP9.78□□□□□ -0.84
CUX1-206ENST00000437600 CPA2P48052 419 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 PPP2R5DQ14738 602 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 NT5DC4Q86YG4 428 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 ZNF276Q8N554 614 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 BANPQ8N9N5 519 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 STKLD1Q8NE28 680 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 MZB1Q8WU39 189 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 APOL2Q9BQE5 337 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 TSPYL2Q9H2G4 693 aaPredicted RBP9.78□□□□□ -0.84
CUX1-206ENST00000437600 MANSC1Q9H8J5 431 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 ANLNQ9NQW6 1124 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 TMEM30AQ9NV96 361 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 UBP1Q9NZI7 540 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 EFR3BQ9Y2G0 817 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 TRPV2Q9Y5S1 764 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 RPS6KL1Q9Y6S9 549 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 CHD9Q3L8U1 2897 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 SCN5AQ14524 2016 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 FAM237BA0A1B0GVD1 139 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 ARL5CA6NH57 179 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 H0Y3Z8 333 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 GOLGA8TH3BQL2 631 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 GNRH1P01148 92 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 T-ENOLP0DO92 83 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 CACNA2D1P54289 1103 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 CES4AQ5XG92 561 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 AGMOQ6ZNB7 445 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 SERINC5Q86VE9 423 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 LRRC52Q8N7C0 313 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 UTP4Q969X6 686 aaKnown RBP9.78□□□□□ -0.84
CUX1-206ENST00000437600 CSPG4P5Q96PW8 444 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 MED10Q9BTT4 135 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 SENP6Q9GZR1 1112 aaPredicted RBP9.78□□□□□ -0.84
CUX1-206ENST00000437600 DTLQ9NZJ0 730 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 SLC24A2Q9UI40 661 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 NUDT5Q9UKK9 219 aa9.78□□□□□ -0.84
CUX1-206ENST00000437600 WDR27A2RRH5 827 aa9.77□□□□□ -0.84
CUX1-206ENST00000437600 M0QYT0 321 aa9.77□□□□□ -0.84
CUX1-206ENST00000437600 NRP1O14786 923 aa9.77□□□□□ -0.84
CUX1-206ENST00000437600 PRPF4O43172 522 aaKnown RBP eCLIP9.77□□□□□ -0.843e-6■■□□□ 11.6
CUX1-206ENST00000437600 PQBP1O60828 265 aaKnown RBP9.77□□□□□ -0.84
CUX1-206ENST00000437600 CD4P01730 458 aa9.77□□□□□ -0.84
CUX1-206ENST00000437600 HSPA8P11142 646 aaKnown RBP9.77□□□□□ -0.84
CUX1-206ENST00000437600 CALRP27797 417 aaKnown RBP9.77□□□□□ -0.84
CUX1-206ENST00000437600 AXLP30530 894 aa9.77□□□□□ -0.84
CUX1-206ENST00000437600 HOXC8P31273 242 aa9.77□□□□□ -0.84
CUX1-206ENST00000437600 CLNS1AP54105 237 aaKnown RBP9.77□□□□□ -0.84
CUX1-206ENST00000437600 NAIF1Q69YI7 327 aaPredicted RBP9.77□□□□□ -0.84
CUX1-206ENST00000437600 UNC5AQ6ZN44 842 aa9.77□□□□□ -0.84
CUX1-206ENST00000437600 PCSK9Q8NBP7 692 aaKnown RBP9.77□□□□□ -0.84
CUX1-206ENST00000437600 FAXDC2Q96IV6 333 aa9.77□□□□□ -0.84
CUX1-206ENST00000437600 ADAM2Q99965 735 aa9.77□□□□□ -0.84
CUX1-206ENST00000437600 FOXP3Q9BZS1 431 aa9.77□□□□□ -0.84
CUX1-206ENST00000437600 KANSL3Q9P2N6 904 aa9.77□□□□□ -0.84
CUX1-206ENST00000437600 E7ESA3 106 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 I6L893 689 aaPredicted RBP9.77□□□□□ -0.85
CUX1-206ENST00000437600 B3GAT3O94766 335 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 VAV1P15498 845 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 ATP2A2P16615 1042 aaKnown RBP9.77□□□□□ -0.85
CUX1-206ENST00000437600 EPHB2P29323 1055 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 BRCC3P46736 316 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 SULT1E1P49888 294 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 ARHGEF6Q15052 776 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 NLRP9Q7RTR0 991 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 KDELC2Q7Z4H8 507 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 RSPH3Q86UC2 560 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 TDRPQ86YL5 185 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 ANKRD52Q8NB46 1076 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 SENP8Q96LD8 212 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 C20orf27Q9GZN8 174 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 PCMTD2Q9NV79 361 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 HEY2Q9UBP5 337 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 ACTL7BQ9Y614 415 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 HMX2A2RU54 273 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 MYBPHLA2RUH7 354 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 ITGB1P05556 798 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 THP07101 528 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 SERPINB3P29508 390 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 PAQR9Q6ZVX9 377 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 GPRIN1Q7Z2K8 1008 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 B3GALNT2Q8NCR0 500 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 ZNF560Q96MR9 790 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 SRPK1Q96SB4 655 aaKnown RBP9.77□□□□□ -0.85
CUX1-206ENST00000437600 DDX43Q9NXZ2 648 aaKnown RBP9.77□□□□□ -0.85
CUX1-206ENST00000437600 SMG5Q9UPR3 1016 aaKnown RBP9.77□□□□□ -0.85
CUX1-206ENST00000437600 PSAT1Q9Y617 370 aa9.77□□□□□ -0.85
CUX1-206ENST00000437600 USP17L7P0C7H9 530 aa9.76□□□□□ -0.85
CUX1-206ENST00000437600 KCNE1P15382 129 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms