RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 C10orf67Q8IYJ2 551 aa21.81■■□□□ 1.08
PTPRF-207ENST00000436724 GIPC2Q8TF65 315 aa21.81■■□□□ 1.08
PTPRF-207ENST00000436724 RTP4Q96DX8 246 aa21.81■■□□□ 1.08
PTPRF-207ENST00000436724 ATP6V1G3Q96LB4 118 aa21.81■■□□□ 1.08
PTPRF-207ENST00000436724 BCCIPQ9P287 314 aaKnown RBP eCLIP21.81■■□□□ 1.08
PTPRF-207ENST00000436724 LRIG2O94898 1065 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 HAPLN1P10915 354 aaPredicted RBP21.8■■□□□ 1.08
PTPRF-207ENST00000436724 VAV1P15498 845 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 XRCC4Q13426 336 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 BTG3Q14201 252 aaPredicted RBP21.8■■□□□ 1.08
PTPRF-207ENST00000436724 MFSD5Q6N075 450 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 CDKL3Q8IVW4 592 aaPredicted RBP21.8■■□□□ 1.08
PTPRF-207ENST00000436724 BCAS4Q8TDM0 211 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 QKIQ96PU8 341 aaKnown RBP eCLIP21.8■■□□□ 1.08
PTPRF-207ENST00000436724 RABEP2Q9H5N1 569 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 RAB6BQ9NRW1 208 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 IL37Q9NZH6 218 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 MTRRQ9UBK8 725 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 XPO7Q9UIA9 1087 aaKnown RBP21.8■■□□□ 1.08
PTPRF-207ENST00000436724 MRPL42Q9Y6G3 142 aaKnown RBP21.8■■□□□ 1.08
PTPRF-207ENST00000436724 PLXNA3P51805 1871 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 TLDC2A0PJX2 215 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 CFAP69A5D8W1 941 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 A6NNZ2 444 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 TBX18O95935 607 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 ATF6P18850 670 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 YWHAQP27348 245 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 MAGEA4P43358 317 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 EIF3BP55884 814 aaKnown RBP21.8■■□□□ 1.08
PTPRF-207ENST00000436724 TAF10Q12962 218 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 TUBB8Q3ZCM7 444 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 SLC8B1Q6J4K2 584 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 PCGF5Q86SE9 256 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 NPWQ8N729 165 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 FBXO32Q969P5 355 aa21.8■■□□□ 1.08
PTPRF-207ENST00000436724 LAMA3Q16787 3333 aa21.79■■□□□ 1.08
PTPRF-207ENST00000436724 SRGAP2BP0DMP2 458 aa21.79■■□□□ 1.08
PTPRF-207ENST00000436724 SLCO1A2P46721 670 aa21.79■■□□□ 1.08
PTPRF-207ENST00000436724 CCT5P48643 541 aa21.79■■□□□ 1.08
PTPRF-207ENST00000436724 MSS51Q4VC12 460 aa21.79■■□□□ 1.08
PTPRF-207ENST00000436724 FNBP1LQ5T0N5 605 aa21.79■■□□□ 1.08
PTPRF-207ENST00000436724 EPS8L3Q8TE67 593 aaKnown RBP21.79■■□□□ 1.08
PTPRF-207ENST00000436724 TFB1MQ8WVM0 346 aaKnown RBP21.79■■□□□ 1.08
PTPRF-207ENST00000436724 TMEM106CQ9BVX2 250 aa21.79■■□□□ 1.08
PTPRF-207ENST00000436724 ARHGEF38Q9NXL2 777 aa21.79■■□□□ 1.08
PTPRF-207ENST00000436724 GREB1Q4ZG55 1949 aa21.79■■□□□ 1.08
PTPRF-207ENST00000436724 ANKRD65E5RJM6 399 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 EPHB2P29323 1055 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 PAFAH1B3Q15102 231 aaKnown RBP21.78■■□□□ 1.08
PTPRF-207ENST00000436724 RASIP1Q5U651 963 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 HEATR6Q6AI08 1181 aaKnown RBP21.78■■□□□ 1.08
PTPRF-207ENST00000436724 ZNF558Q96NG5 402 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 CLSTN3Q9BQT9 956 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 PRDM12Q9H4Q4 367 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 PAK5Q9P286 719 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 FAM92AA1XBS5 289 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 HMGB1P1B2RPK0 211 aaPredicted RBP21.78■■□□□ 1.08
PTPRF-207ENST00000436724 PAGE1O75459 146 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 MOCS2O96007 188 aaPredicted RBP21.78■■□□□ 1.08
PTPRF-207ENST00000436724 CCR1P32246 355 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 AP1B1Q10567 949 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 PDIA2Q13087 525 aaKnown RBP21.78■■□□□ 1.08
PTPRF-207ENST00000436724 HIF1AQ16665 826 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 RELL1Q8IUW5 271 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 CCDC13Q8IYE1 715 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 ZBED8Q8IZ13 594 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 SLC39A11Q8N1S5 342 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 TMEM199Q8N511 208 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 CCNYQ8ND76 341 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 TMEM169Q96HH4 297 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 EPAS1Q99814 870 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 CEP41Q9BYV8 373 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 FOXP3Q9BZS1 431 aa21.78■■□□□ 1.08
PTPRF-207ENST00000436724 MAGED2Q9UNF1 606 aaPredicted RBP21.78■■□□□ 1.08
PTPRF-207ENST00000436724 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.78■■□□□ 1.08
PTPRF-207ENST00000436724 NUP205Q92621 2012 aa21.77■■□□□ 1.08
PTPRF-207ENST00000436724 NR1D1P20393 614 aa21.77■■□□□ 1.08
PTPRF-207ENST00000436724 CORO7P57737 925 aa21.77■■□□□ 1.08
PTPRF-207ENST00000436724 PPARDQ03181 441 aa21.77■■□□□ 1.08
PTPRF-207ENST00000436724 SMARCB1Q12824 385 aa21.77■■□□□ 1.08
PTPRF-207ENST00000436724 HOOK3Q86VS8 718 aa21.77■■□□□ 1.08
PTPRF-207ENST00000436724 HTR3CQ8WXA8 447 aa21.77■■□□□ 1.08
PTPRF-207ENST00000436724 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP21.77■■□□□ 1.07
PTPRF-207ENST00000436724 METTL18O95568 372 aa21.77■■□□□ 1.07
PTPRF-207ENST00000436724 SOD2P04179 222 aa21.77■■□□□ 1.07
PTPRF-207ENST00000436724 HCAR3P49019 387 aa21.77■■□□□ 1.07
PTPRF-207ENST00000436724 EFEMP1Q12805 493 aa21.77■■□□□ 1.07
PTPRF-207ENST00000436724 KCNJ11Q14654 390 aa21.77■■□□□ 1.07
PTPRF-207ENST00000436724 LONRF1Q17RB8 773 aa21.77■■□□□ 1.07
PTPRF-207ENST00000436724 CAPN12Q6ZSI9 719 aa21.77■■□□□ 1.07
PTPRF-207ENST00000436724 C16orf59Q7L2K0 433 aa21.77■■□□□ 1.07
PTPRF-207ENST00000436724 ANKMY2Q8IV38 441 aa21.77■■□□□ 1.07
PTPRF-207ENST00000436724 AUTS2Q8WXX7 1259 aa21.77■■□□□ 1.07
PTPRF-207ENST00000436724 SPATA17Q96L03 361 aa21.77■■□□□ 1.07
PTPRF-207ENST00000436724 F5H423 210 aaPredicted RBP21.76■■□□□ 1.07
PTPRF-207ENST00000436724 RTN3O95197 1032 aaPredicted RBP21.76■■□□□ 1.07
PTPRF-207ENST00000436724 HSPA1AP0DMV8 641 aaKnown RBP21.76■■□□□ 1.07
PTPRF-207ENST00000436724 HSPA1BP0DMV9 641 aaKnown RBP21.76■■□□□ 1.07
PTPRF-207ENST00000436724 GUCY1A3Q02108 690 aa21.76■■□□□ 1.07
PTPRF-207ENST00000436724 BRMS1LQ5PSV4 323 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms