RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 LGI2Q8N0V4 545 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 CCDC26Q8TAB7 109 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 USP33Q8TEY7 942 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 RXFP2Q8WXD0 754 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 MYEOVQ96EZ4 313 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 BTN2A3PQ96KV6 586 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 TRIM5Q9C035 493 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 IRF2BPLQ9H1B7 796 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 PIGVQ9NUD9 493 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 FBXO4Q9UKT5 387 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 A0A0A0MRY4 1105 aa19.34■□□□□ 0.69
SHH-203ENST00000435425 KCNU1A8MYU2 1149 aa19.34■□□□□ 0.69
SHH-203ENST00000435425 DDX3XO00571 662 aaKnown RBP eCLIP19.34■□□□□ 0.69
SHH-203ENST00000435425 SERPING1P05155 500 aa19.34■□□□□ 0.69
SHH-203ENST00000435425 PLEKP08567 350 aaPredicted RBP19.34■□□□□ 0.69
SHH-203ENST00000435425 PDGFRAP16234 1089 aa19.34■□□□□ 0.69
SHH-203ENST00000435425 TACR2P21452 398 aa19.34■□□□□ 0.69
SHH-203ENST00000435425 HOXD9P28356 352 aaPredicted RBP19.34■□□□□ 0.69
SHH-203ENST00000435425 NHLH1Q02575 133 aa19.34■□□□□ 0.69
SHH-203ENST00000435425 CDO1Q16878 200 aa19.34■□□□□ 0.69
SHH-203ENST00000435425 MS4A13Q5J8X5 152 aa19.34■□□□□ 0.69
SHH-203ENST00000435425 DNAJC24Q6P3W2 148 aa19.34■□□□□ 0.69
SHH-203ENST00000435425 GAS2L3Q86XJ1 694 aa19.34■□□□□ 0.69
SHH-203ENST00000435425 VSTM4Q8IW00 320 aa19.34■□□□□ 0.69
SHH-203ENST00000435425 CFAP52Q8N1V2 620 aa19.34■□□□□ 0.69
SHH-203ENST00000435425 ALLCQ8N6M5 410 aa19.34■□□□□ 0.69
SHH-203ENST00000435425 SYN2Q92777 582 aaPredicted RBP19.34■□□□□ 0.69
SHH-203ENST00000435425 WDCPQ9H6R7 721 aa19.34■□□□□ 0.69
SHH-203ENST00000435425 PRMT8Q9NR22 394 aaPredicted RBP19.34■□□□□ 0.69
SHH-203ENST00000435425 FBXO10Q9UK96 956 aa19.34■□□□□ 0.69
SHH-203ENST00000435425 SLC8A2Q9UPR5 921 aa19.34■□□□□ 0.69
SHH-203ENST00000435425 ARIH1Q9Y4X5 557 aaPredicted RBP19.34■□□□□ 0.69
SHH-203ENST00000435425 TYW5A2RUC4 315 aaKnown RBP19.33■□□□□ 0.68
SHH-203ENST00000435425 CHURC1-FNTBB4DL54 471 aa19.33■□□□□ 0.68
SHH-203ENST00000435425 PRRT4C9JH25 899 aa19.33■□□□□ 0.68
SHH-203ENST00000435425 GFRA2O00451 464 aa19.33■□□□□ 0.68
SHH-203ENST00000435425 KLF8O95600 359 aaPredicted RBP19.33■□□□□ 0.68
SHH-203ENST00000435425 RRM1P23921 792 aa19.33■□□□□ 0.68
SHH-203ENST00000435425 SDC4P31431 198 aa19.33■□□□□ 0.68
SHH-203ENST00000435425 RPS24P62847 133 aaKnown RBP19.33■□□□□ 0.68
SHH-203ENST00000435425 MRPS21P82921 87 aaKnown RBP19.33■□□□□ 0.68
SHH-203ENST00000435425 GEN1Q17RS7 908 aa19.33■□□□□ 0.68
SHH-203ENST00000435425 C15orf59Q2T9L4 293 aaPredicted RBP19.33■□□□□ 0.68
SHH-203ENST00000435425 HGSNATQ68CP4 663 aa19.33■□□□□ 0.68
SHH-203ENST00000435425 HEATR6Q6AI08 1181 aaKnown RBP19.33■□□□□ 0.68
SHH-203ENST00000435425 MAMSTRQ6ZN01 415 aa19.33■□□□□ 0.68
SHH-203ENST00000435425 CARNMT1Q8N4J0 409 aa19.33■□□□□ 0.68
SHH-203ENST00000435425 TXNDC5Q8NBS9 432 aaKnown RBP19.33■□□□□ 0.68
SHH-203ENST00000435425 HJURPQ8NCD3 748 aaPredicted RBP19.33■□□□□ 0.68
SHH-203ENST00000435425 C3orf20Q8ND61 904 aa19.33■□□□□ 0.68
SHH-203ENST00000435425 NT5C3BQ969T7 300 aa19.33■□□□□ 0.68
SHH-203ENST00000435425 PRICKLE1Q96MT3 831 aaPredicted RBP19.33■□□□□ 0.68
SHH-203ENST00000435425 TKTL2Q9H0I9 626 aa19.33■□□□□ 0.68
SHH-203ENST00000435425 SIK2Q9H0K1 926 aa19.33■□□□□ 0.68
SHH-203ENST00000435425 BZW2Q9Y6E2 419 aaKnown RBP19.33■□□□□ 0.68
SHH-203ENST00000435425 R4GN57 208 aa19.33■□□□□ 0.68
SHH-203ENST00000435425 SIGLEC16A6NMB1 481 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 F5H5T6 163 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 ATMINO43313 823 aaPredicted RBP19.32■□□□□ 0.68
SHH-203ENST00000435425 PAGE1O75459 146 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 ADCY5O95622 1261 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 F9P00740 461 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 FTLP02792 175 aaPredicted RBP19.32■□□□□ 0.68
SHH-203ENST00000435425 TPM1P09493 284 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 RFC1P35251 1148 aaPredicted RBP19.32■□□□□ 0.68
SHH-203ENST00000435425 GGCXP38435 758 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 WASP42768 502 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 KIR2DL1P43626 348 aaPredicted RBP19.32■□□□□ 0.68
SHH-203ENST00000435425 CXCR3P49682 368 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 TRIM14Q14142 442 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 DMC1Q14565 340 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 CCDC14Q49A88 953 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 RAB6CQ53S08 254 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 SH3PXD2AQ5TCZ1 1133 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 PPP1R2P3Q6NXS1 205 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 ARCQ7LC44 396 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 ZNF513Q8N8E2 541 aaPredicted RBP19.32■□□□□ 0.68
SHH-203ENST00000435425 ACDQ96AP0 544 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 PHOX2BQ99453 314 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 SLC2A11Q9BYW1 496 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 RAB6CQ9H0N0 254 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 TMPRSS4Q9NRS4 437 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 ADAMTS1Q9UHI8 967 aa19.32■□□□□ 0.68
SHH-203ENST00000435425 MYO18AQ92614 2054 aaKnown RBP19.32■□□□□ 0.68
SHH-203ENST00000435425 ANKRD62A6NC57 917 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 C2CD4BA6NLJ0 364 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 RTN2O75298 545 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 GPD1P21695 349 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 RDXP35241 583 aaKnown RBP19.31■□□□□ 0.68
SHH-203ENST00000435425 PXNP49023 591 aaPredicted RBP19.31■□□□□ 0.68
SHH-203ENST00000435425 GSCP56915 257 aaPredicted RBP19.31■□□□□ 0.68
SHH-203ENST00000435425 DMWDQ09019 674 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 BRMS1LQ5PSV4 323 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 EGFLAMQ63HQ2 1017 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 DCUN1D2Q6PH85 259 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 WDR59Q6PJI9 974 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 SARM1Q6SZW1 724 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 SYT13Q7L8C5 426 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 TMC6Q7Z403 805 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 VPS36Q86VN1 386 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms