RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 DHX35Q9H5Z1 703 aaKnown RBP14.73□□□□□ -0.05
LIG1-202ENST00000427526 HBS1LQ9Y450 684 aaKnown RBP14.73□□□□□ -0.05
LIG1-202ENST00000427526 SNX9Q9Y5X1 595 aa14.73□□□□□ -0.05
LIG1-202ENST00000427526 SCN1AP35498 2009 aa14.73□□□□□ -0.05
LIG1-202ENST00000427526 CITO14578 2027 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 TOP3BO95985 862 aaKnown RBP14.72□□□□□ -0.05
LIG1-202ENST00000427526 CYP2C9P11712 490 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 CPA2P48052 419 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 SESN3P58005 492 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 MUM1Q2TAK8 710 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 STXBP5Q5T5C0 1151 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 C17orf99Q6UX52 265 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 CATSPER4Q7RTX7 472 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 LMNTD2Q8IXW0 634 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 ZNF513Q8N8E2 541 aaPredicted RBP14.72□□□□□ -0.05
LIG1-202ENST00000427526 RBM15BQ8NDT2 890 aaKnown RBP14.72□□□□□ -0.05
LIG1-202ENST00000427526 ZMAT2Q96NC0 199 aaKnown RBP14.72□□□□□ -0.05
LIG1-202ENST00000427526 SNTG2Q9NY99 539 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 DTLQ9NZJ0 730 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 PPARGC1AQ9UBK2 798 aaKnown RBP14.72□□□□□ -0.05
LIG1-202ENST00000427526 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.72□□□□□ -0.05
LIG1-202ENST00000427526 NRCAMQ92823 1304 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 MANSC4A6NHS7 340 aaPredicted RBP14.72□□□□□ -0.05
LIG1-202ENST00000427526 ENO1P06733 434 aaKnown RBP14.72□□□□□ -0.05
LIG1-202ENST00000427526 LINGO3P0C6S8 592 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 KITP10721 976 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 DESP17661 470 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 CNTFP26441 200 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 MFSD10Q14728 455 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 CCDC6Q16204 474 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 ARHGAP17Q68EM7 881 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 NCBP2-AS2Q69YL0 99 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 SLC26A9Q7LBE3 791 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 ARHGAP24Q8N264 748 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 CCDC33Q8N5R6 958 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 DNAJB3Q8WWF6 145 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 KCTD15Q96SI1 283 aaPredicted RBP14.72□□□□□ -0.05
LIG1-202ENST00000427526 LPIN3Q9BQK8 851 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 THAP1Q9NVV9 213 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 AP4E1Q9UPM8 1137 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 USP3Q9Y6I4 520 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 TRIP11Q15643 1979 aa14.72□□□□□ -0.05
LIG1-202ENST00000427526 EIF4E1BA6NMX2 242 aaKnown RBP14.71□□□□□ -0.05
LIG1-202ENST00000427526 H3BRJ5 948 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 DGKIO75912 1065 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 ATP5BP06576 529 aaKnown RBP14.71□□□□□ -0.05
LIG1-202ENST00000427526 MYL3P08590 195 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 RPL34P49207 117 aaKnown RBP14.71□□□□□ -0.05
LIG1-202ENST00000427526 SNX16P57768 344 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 WASHC5Q12768 1159 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 STX3Q13277 289 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 ZBTB6Q15916 424 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 SOWAHAQ2M3V2 549 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 KYAT3Q6YP21 454 aaKnown RBP14.71□□□□□ -0.05
LIG1-202ENST00000427526 LRRC74BQ6ZQY2 392 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 SAPCD2Q86UD0 394 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 UNC5BQ8IZJ1 945 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 DEPDC1BQ8WUY9 529 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 SCG3Q8WXD2 468 aaKnown RBP14.71□□□□□ -0.05
LIG1-202ENST00000427526 OLFM3Q96PB7 478 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 GCOM2Q9BZD3 368 aaPredicted RBP14.71□□□□□ -0.05
LIG1-202ENST00000427526 MARCOQ9UEW3 520 aaPredicted RBP14.71□□□□□ -0.05
LIG1-202ENST00000427526 TAGLN3Q9UI15 199 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 F8W8V4 182 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 TREHO43280 583 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 MRPS35P82673 323 aaKnown RBP14.71□□□□□ -0.05
LIG1-202ENST00000427526 THOC5Q13769 683 aaKnown RBP14.71□□□□□ -0.05
LIG1-202ENST00000427526 DBN1Q16643 649 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 IFNL1Q8IU54 200 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 CCDC185Q8N715 623 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 PLEKHA5Q9HAU0 1116 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 EMCNQ9ULC0 261 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 DERAQ9Y315 318 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 NR2E3Q9Y5X4 410 aa14.71□□□□□ -0.05
LIG1-202ENST00000427526 DPPA5A6NC42 116 aa14.71□□□□□ -0.06
LIG1-202ENST00000427526 DCAF8L1A6NGE4 600 aa14.71□□□□□ -0.06
LIG1-202ENST00000427526 SERPINA6P08185 405 aa14.71□□□□□ -0.06
LIG1-202ENST00000427526 MLNP12872 115 aa14.71□□□□□ -0.06
LIG1-202ENST00000427526 VAV1P15498 845 aa14.71□□□□□ -0.06
LIG1-202ENST00000427526 AMPD1P23109 780 aa14.71□□□□□ -0.06
LIG1-202ENST00000427526 NIPAL4Q0D2K0 466 aa14.71□□□□□ -0.06
LIG1-202ENST00000427526 HEATR6Q6AI08 1181 aaKnown RBP14.71□□□□□ -0.06
LIG1-202ENST00000427526 RGMBQ6NW40 437 aa14.71□□□□□ -0.06
LIG1-202ENST00000427526 ZCCHC23Q6ZST2 131 aa14.71□□□□□ -0.06
LIG1-202ENST00000427526 MARK2Q7KZI7 788 aaKnown RBP14.71□□□□□ -0.06
LIG1-202ENST00000427526 UNC93AQ86WB7 457 aa14.71□□□□□ -0.06
LIG1-202ENST00000427526 PDCD7Q8N8D1 485 aaKnown RBP14.71□□□□□ -0.06
LIG1-202ENST00000427526 TMEM40Q8WWA1 233 aa14.71□□□□□ -0.06
LIG1-202ENST00000427526 FAM210AQ96ND0 272 aa14.71□□□□□ -0.06
LIG1-202ENST00000427526 EBF4Q9BQW3 602 aa14.71□□□□□ -0.06
LIG1-202ENST00000427526 DPEP3Q9H4B8 488 aa14.71□□□□□ -0.06
LIG1-202ENST00000427526 GJD2Q9UKL4 321 aa14.71□□□□□ -0.06
LIG1-202ENST00000427526 MFHAS1Q9Y4C4 1052 aa14.71□□□□□ -0.06
LIG1-202ENST00000427526 WDR27A2RRH5 827 aa14.7□□□□□ -0.06
LIG1-202ENST00000427526 MBLAC1A4D2B0 266 aaPredicted RBP14.7□□□□□ -0.06
LIG1-202ENST00000427526 SDR42E2A6NKP2 422 aa14.7□□□□□ -0.06
LIG1-202ENST00000427526 TM7SF2O76062 418 aa14.7□□□□□ -0.06
LIG1-202ENST00000427526 ALDOAP04075 364 aaKnown RBP14.7□□□□□ -0.06
LIG1-202ENST00000427526 PDHA1P08559 390 aa14.7□□□□□ -0.06
LIG1-202ENST00000427526 SCNN1AP37088 669 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms