RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ERFP50548 548 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 KCNMA1Q12791 1236 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 SIX6OS1Q8N1H7 587 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 RNF34Q969K3 372 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 ZNF668Q96K58 619 aaPredicted RBP10.09□□□□□ -0.79
USP54-205ENST00000424265 KIFC3Q9BVG8 833 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 CRNNQ9UBG3 495 aaPredicted RBP10.09□□□□□ -0.79
USP54-205ENST00000424265 CDY2AQ9Y6F7 541 aa10.09□□□□□ -0.79
USP54-205ENST00000424265 LRRN2O75325 713 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 ZBTB11O95625 1053 aaPredicted RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 F2P00734 622 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 ODC1P11926 461 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 COL6A2P12110 1019 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 CD44P16070 742 aaKnown RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 HABP4Q5JVS0 413 aaKnown RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 ZNF317Q96PQ6 595 aaPredicted RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 GCNAQ96QF7 691 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 DPP3Q9NY33 737 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 TBC1D14Q9P2M4 693 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 ARHGAP28Q9P2N2 729 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 XPO1O14980 1071 aaKnown RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 TNFAIP8O95379 198 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 FTCDO95954 541 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 THP07101 528 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 GALNTL6Q49A17 601 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 IL23RQ5VWK5 629 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 PLEKHA7Q6IQ23 1121 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 C4orf50Q6ZRC1 276 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 ELMOD2Q8IZ81 293 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 CENPSQ8N2Z9 138 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 OR6Y1Q8NGX8 325 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 LILRB4Q8NHJ6 448 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 LILRB1Q8NHL6 650 aaPredicted RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 ZNF296Q8WUU4 475 aaPredicted RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 ZNF229Q9UJW7 825 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 FAM25EA8MYX2 175 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 STMN1P16949 149 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 EEF1DP29692 281 aaKnown RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 ACADSBP45954 432 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 TAPT1Q6NXT6 567 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 FBXO46Q6PJ61 603 aaPredicted RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 NDUFAF2Q8N183 169 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 RNPEPQ9H4A4 650 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 MRPL40Q9NQ50 206 aaKnown RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 NDFIP2Q9NV92 336 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 PHIPQ8WWQ0 1821 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 DAPK3O43293 454 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 DARSP14868 501 aaKnown RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 SELPP16109 830 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 ATF4P18848 351 aaPredicted RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 SERPINB1P30740 379 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 EIF4A3P38919 411 aaKnown RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 OCA2Q04671 838 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 DNAJC24Q6P3W2 148 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 TMEM270Q6UE05 265 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 ELMOD1Q8N336 334 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 ACO2Q99798 780 aaKnown RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 PTPN18Q99952 460 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 CBWD1Q9BRT8 395 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 CALN1Q9BXU9 219 aa10.08□□□□□ -0.8
USP54-205ENST00000424265 SENP6Q9GZR1 1112 aaPredicted RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 MRPL39Q9NYK5 338 aaKnown RBP10.08□□□□□ -0.8
USP54-205ENST00000424265 CENPBD1B2RD01 187 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 PQBP1O60828 265 aaKnown RBP10.07□□□□□ -0.8
USP54-205ENST00000424265 TFPTP0C1Z6 253 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 CCDC130P13994 396 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 UCHL3P15374 230 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 NEK3P51956 506 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 MARSP56192 900 aaKnown RBP10.07□□□□□ -0.8
USP54-205ENST00000424265 YWHAGP61981 247 aaKnown RBP eCLIP10.07□□□□□ -0.8
USP54-205ENST00000424265 STX3Q13277 289 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 IKBKEQ14164 716 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 ARSHQ5FYA8 562 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 PPP4R4Q6NUP7 873 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 DDX42Q86XP3 938 aaKnown RBP eCLIP10.07□□□□□ -0.8
USP54-205ENST00000424265 TRAPPC12Q8WVT3 735 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 RUNDC3BQ96NL0 473 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 HSD3B7Q9H2F3 369 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 PCDHB2Q9Y5E7 798 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 TTC26A0AVF1 554 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 TMEM120BA0PK00 339 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 LRRC53A6NM62 1247 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 TADA2AO75478 443 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 CD58P19256 250 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 LRPAP1P30533 357 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 GNA15P30679 374 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 GRM5P41594 1212 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 CENPAP49450 140 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 ITGADQ13349 1161 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 ALKBH5Q6P6C2 394 aaKnown RBP10.07□□□□□ -0.8
USP54-205ENST00000424265 ASRGL1Q7L266 308 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 CYP2U1Q7Z449 544 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 ERI1Q8IV48 349 aaKnown RBP10.07□□□□□ -0.8
USP54-205ENST00000424265 CCDC28AQ8IWP9 274 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 SNX9Q9Y5X1 595 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 SQORQ9Y6N5 450 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 SSC5DA1L4H1 1573 aa10.07□□□□□ -0.8
USP54-205ENST00000424265 PGRMC1O00264 195 aaKnown RBP10.07□□□□□ -0.8
USP54-205ENST00000424265 ASNA1O43681 348 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms