RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CBFA2T3O75081 653 aa11□□□□□ -0.65
USP54-204ENST00000422491 ZNF189O75820 626 aaPredicted RBP11□□□□□ -0.65
USP54-204ENST00000422491 H6PDO95479 791 aa11□□□□□ -0.65
USP54-204ENST00000422491 GLDCP23378 1020 aa11□□□□□ -0.65
USP54-204ENST00000422491 ADORA2AP29274 412 aa11□□□□□ -0.65
USP54-204ENST00000422491 MSX2P35548 267 aaPredicted RBP11□□□□□ -0.65
USP54-204ENST00000422491 PHKA2P46019 1235 aa11□□□□□ -0.65
USP54-204ENST00000422491 METTL21CQ5VZV1 264 aa11□□□□□ -0.65
USP54-204ENST00000422491 DENND1BQ6P3S1 775 aa11□□□□□ -0.65
USP54-204ENST00000422491 C16orf89Q6UX73 402 aa11□□□□□ -0.65
USP54-204ENST00000422491 BNC2Q6ZN30 1099 aaPredicted RBP11□□□□□ -0.65
USP54-204ENST00000422491 CYP4V2Q6ZWL3 525 aaPredicted RBP11□□□□□ -0.65
USP54-204ENST00000422491 TRIML2Q8N7C3 387 aa11□□□□□ -0.65
USP54-204ENST00000422491 BHLHE22Q8NFJ8 381 aaPredicted RBP11□□□□□ -0.65
USP54-204ENST00000422491 MAPK15Q8TD08 544 aa11□□□□□ -0.65
USP54-204ENST00000422491 SLC7A3Q8WY07 619 aa11□□□□□ -0.65
USP54-204ENST00000422491 DLG3Q92796 817 aa11□□□□□ -0.65
USP54-204ENST00000422491 KLHL32Q96NJ5 620 aa11□□□□□ -0.65
USP54-204ENST00000422491 CDRT15Q96T59 188 aa11□□□□□ -0.65
USP54-204ENST00000422491 RALBP11234 206 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 PTPN1P18031 435 aaKnown RBP10.99□□□□□ -0.65
USP54-204ENST00000422491 RBL1P28749 1068 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 EPHA3P29320 983 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 ACADVLP49748 655 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 PDAP1Q13442 181 aaKnown RBP10.99□□□□□ -0.65
USP54-204ENST00000422491 CEACAM7Q14002 265 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 PPP2R5DQ14738 602 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 PPM1LQ5SGD2 360 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 CARM1Q86X55 608 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 KYQ8NBH2 561 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 GRIN3AQ8TCU5 1115 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 CLEC4DQ8WXI8 215 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 MRIQ9BWK5 157 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 YIPF2Q9BWQ6 316 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 PFDN4Q9NQP4 134 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 SLC17A6Q9P2U8 582 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 EPS15L1Q9UBC2 864 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 DCDC2Q9UHG0 476 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 PCDHB12Q9Y5F1 795 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 WDR81Q562E7 1941 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 H3BNH8 94 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 PLA2G6O60733 806 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 CCDC130P13994 396 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 PIK3R1P27986 724 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 POLR2BP30876 1174 aaKnown RBP10.99□□□□□ -0.65
USP54-204ENST00000422491 SERPINB5P36952 375 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 NDST2P52849 883 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 OXCT1P55809 520 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 NUP107P57740 925 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 NAA20P61599 178 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 PSMC1P62191 440 aaKnown RBP10.99□□□□□ -0.65
USP54-204ENST00000422491 KRT76Q01546 638 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 C16orf72Q14CZ0 275 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 FAM47CQ5HY64 1035 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 CYS1Q717R9 158 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 SNX32Q86XE0 403 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 UNC5BQ8IZJ1 945 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 ZNF781Q8N8C0 355 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 SLC4A11Q8NBS3 891 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 MCPH1Q8NEM0 835 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 TRPC4APQ8TEL6 797 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 GIPC3Q8TF64 312 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 MASTLQ96GX5 879 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 CNDP1Q96KN2 507 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 ZNF597Q96LX8 424 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 OR52B2Q96RD2 323 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 GCOM2Q9BZD3 368 aaPredicted RBP10.99□□□□□ -0.65
USP54-204ENST00000422491 CDH19Q9H159 772 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 RNPEPQ9H4A4 650 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 TMEM216Q9P0N5 145 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 IGSF9Q9P2J2 1179 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 BTAF1O14981 1849 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 ADGRA2Q96PE1 1338 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 H0YJX3 145 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 SERPINB7O75635 380 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 RNASEH2AO75792 299 aaKnown RBP10.99□□□□□ -0.65
USP54-204ENST00000422491 BCAS2O75934 225 aaPredicted RBP10.99□□□□□ -0.65
USP54-204ENST00000422491 ZBED1O96006 694 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 HSPA1LP34931 641 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 MLH1P40692 756 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 DPP6P42658 865 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 CDH6P55285 790 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 NIPAL4Q0D2K0 466 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 TFDP2Q14188 446 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 MGAT5BQ3V5L5 792 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 ANKDD1AQ495B1 522 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 XYLT1Q86Y38 959 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 PLD5Q8N7P1 536 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 PDCD6IPQ8WUM4 868 aaKnown RBP10.99□□□□□ -0.65
USP54-204ENST00000422491 ATP2A3Q93084 1043 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 VPS50Q96JG6 964 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 CPXM1Q96SM3 734 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 POLR3FQ9H1D9 316 aaPredicted RBP10.99□□□□□ -0.65
USP54-204ENST00000422491 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.99□□□□□ -0.65
USP54-204ENST00000422491 OLAHQ9NV23 265 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 BCAP29Q9UHQ4 241 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 TCEAL9Q9UHQ7 104 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 CCPG1Q9ULG6 757 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 CDY2AQ9Y6F7 541 aa10.99□□□□□ -0.65
USP54-204ENST00000422491 CDY1Q9Y6F8 540 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms