RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 HDCP19113 662 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 DDX6P26196 483 aaKnown RBP eCLIP17.71■□□□□ 0.431e-7■■■■□ 19.8
CCDC28B-202ENST00000421922 SLC11A2P49281 568 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 SNX1Q13596 522 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 DHX34Q14147 1143 aaKnown RBP17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 ERCC6LQ2NKX8 1250 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 TXNDC8Q6A555 127 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 RWDD4Q6NW29 188 aaKnown RBP17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 CCDC137Q6PK04 289 aaKnown RBP17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 RFX8Q6ZV50 586 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 C12orf50Q8NA57 414 aaPredicted RBP17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 TSC1Q92574 1164 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 P3H4Q92791 437 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 FAF2Q96CS3 445 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 TBC1D31Q96DN5 1066 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 DCLK3Q9C098 648 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 HCFC1R1Q9NWW0 138 aa17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 FEZ2Q9UHY8 353 aaPredicted RBP17.71■□□□□ 0.43
CCDC28B-202ENST00000421922 ZNF197O14709 1029 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 RHOP08100 348 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 EPHB2P29323 1055 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 GTF2F1P35269 517 aaKnown RBP eCLIP17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 COILP38432 576 aaPredicted RBP17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 HCAR3P49019 387 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 LMNB2Q03252 620 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 SIX1Q15475 284 aaPredicted RBP17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 CCNG2Q16589 344 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 CYP1B1Q16678 543 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 C1orf228Q6PIY5 440 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 GAREM2Q75VX8 874 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 BZW1Q7L1Q6 419 aaKnown RBP17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 TMEM150AQ86TG1 271 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 CHSY1Q86X52 802 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 MAB21L3Q8N8X9 362 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 PCDH19Q8TAB3 1148 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 ATG4AQ8WYN0 398 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 SMG7Q92540 1137 aaKnown RBP17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 LRRC3Q9BY71 257 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 LRRC19Q9H756 370 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 CATSPERBQ9H7T0 1116 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 ANLNQ9NQW6 1124 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 ARHGEF4Q9NR80 690 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 SMPD4Q9NXE4 827 aa17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 LSM7Q9UK45 103 aaKnown RBP17.7■□□□□ 0.42
CCDC28B-202ENST00000421922 FGF10O15520 208 aaPredicted RBP17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 CTIFO43310 598 aaKnown RBP17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 ECEL1O95672 775 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 GAS8O95995 478 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 IGLV3-27P01718 113 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 AMPD1P23109 780 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 SERPINB6P35237 376 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 GGCXP38435 758 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 EPHA5P54756 1037 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 DR1Q01658 176 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 OTUD4Q01804 1114 aaKnown RBP17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 ELF2Q15723 593 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 GPR158Q5T848 1215 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 SLC9A4Q6AI14 798 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 TMCO3Q6UWJ1 677 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 GSTA5Q7RTV2 222 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 ARL14EPQ8N8R7 260 aaPredicted RBP17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 ACTL9Q8TC94 416 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 DDX50Q9BQ39 737 aaKnown RBP17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 MAGEB5Q9BZ81 275 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 DNMT3BQ9UBC3 853 aaKnown RBP17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 AMACRQ9UHK6 382 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 ZMYM5Q9UJ78 669 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 R3HDM2Q9Y2K5 976 aaKnown RBP17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 NR2E1Q9Y466 385 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 HEY1Q9Y5J3 304 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 SNX10Q9Y5X0 201 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 HS3ST4Q9Y661 456 aa17.69■□□□□ 0.42
CCDC28B-202ENST00000421922 HELZP42694 1942 aaKnown RBP17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 FAM72CH0Y354 149 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 LRIG2O94898 1065 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 GJA1P17302 382 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 IL4RP24394 825 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 CORO1AP31146 461 aaKnown RBP17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 AVPR1AP37288 418 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 EIF3EP60228 445 aaKnown RBP17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 ADCY2Q08462 1091 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 SEMA3BQ13214 749 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 BYSLQ13895 437 aaKnown RBP17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 PPP1R7Q15435 360 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 FAM72AQ5TYM5 149 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 FAM72DQ6L9T8 149 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 GRASPQ7Z6J2 395 aaPredicted RBP17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 FAM72BQ86X60 149 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 GPR161Q8N6U8 529 aaKnown RBP17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 PQLC3Q8N755 202 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 TTC16Q8NEE8 873 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 C1orf74Q96LT6 269 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 FAM118BQ9BPY3 351 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 LRRC1Q9BTT6 524 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 DONSONQ9NYP3 566 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 ZNF148Q9UQR1 794 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 CPQQ9Y646 472 aa17.68■□□□□ 0.42
CCDC28B-202ENST00000421922 TMEM265A0A087WTH1 108 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 FAM187AA6NFU0 413 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 E9PAM4 449 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms