RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 ATP13A4Q4VNC1 1196 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 ANKRD20A8PQ5CZ79 823 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 ACBD5Q5T8D3 534 aaPredicted RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 RASIP1Q5U651 963 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 NUGGCQ68CJ6 796 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 SLC9A4Q6AI14 798 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 CEP128Q6ZU80 1094 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 BZW1Q7L1Q6 419 aaKnown RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 GSPT2Q8IYD1 628 aaKnown RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 TCEAL8Q8IYN2 117 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 ATP6V0D2Q8N8Y2 350 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 EIF1ADQ8N9N8 165 aaKnown RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 BBOF1Q8ND07 529 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 FAM71BQ8TC56 605 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 ACTL9Q8TC94 416 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 GIPC2Q8TF65 315 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 RSAD2Q8WXG1 361 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 AUTS2Q8WXX7 1259 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 P3H4Q92791 437 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 PLD4Q96BZ4 506 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 TBC1D31Q96DN5 1066 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 SNF8Q96H20 258 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 QKIQ96PU8 341 aaKnown RBP eCLIP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 CSPG4P5Q96PW8 444 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 RNF157Q96PX1 679 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 TGS1Q96RS0 853 aaKnown RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 RUFY1Q96T51 708 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 FMO2Q99518 471 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 HERPUD2Q9BSE4 406 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 TRIM31Q9BZY9 425 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 UBE2OQ9C0C9 1292 aaKnown RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 DPH5Q9H2P9 285 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 CRISPLD1Q9H336 500 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 WDCPQ9H6R7 721 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 NMUR1Q9HB89 426 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 WDR6Q9NNW5 1121 aaKnown RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 ARHGEF4Q9NR80 690 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 DONSONQ9NYP3 566 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 IL37Q9NZH6 218 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 TRPM5Q9NZQ8 1165 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 MARCH2Q9P0N8 246 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 DPP7Q9UHL4 492 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 SLC12A6Q9UHW9 1150 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 ZNF148Q9UQR1 794 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 TLR6Q9Y2C9 796 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 R3HDM2Q9Y2K5 976 aaKnown RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 SLC27A5Q9Y2P5 690 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 HBS1LQ9Y450 684 aaKnown RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 ASB3Q9Y575 518 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 PCDHA11Q9Y5I1 949 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 RAD54BQ9Y620 910 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 DOCK6Q96HP0 2047 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 PDE4DIPQ5VU43 2346 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 ESYT3A0FGR9 886 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 ZSCAN5CA6NGD5 496 aaPredicted RBP6.16□□□□□ -1.42
HMGB3-202ENST00000419110 HACD1B0YJ81 288 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 C5orf67F2Z3F1 127 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 H7C0C1 242 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 FGF19O95750 216 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 CA3P07451 260 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 CNPP09543 421 aaKnown RBP6.16□□□□□ -1.42
HMGB3-202ENST00000419110 ZDHHC11BP0C7U3 371 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 LINC00271P0C7V0 271 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 RBP3P10745 1247 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 PECAM1P16284 738 aaPredicted RBP6.16□□□□□ -1.42
HMGB3-202ENST00000419110 KLRC2P26717 231 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 CDC25CP30307 473 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 L1CAMP32004 1257 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 ADRA1BP35368 520 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 BMPR1AP36894 532 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 SLC19A1P41440 591 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 ATP5OP48047 213 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 NR2C2P49116 596 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 VPS41P49754 854 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 MRPS25P82663 173 aaKnown RBP6.16□□□□□ -1.42
HMGB3-202ENST00000419110 COG7P83436 770 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 CAV1Q03135 178 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 RING1Q06587 406 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 MTMR3Q13615 1198 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 DPYSQ14117 519 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 OASLQ15646 514 aaKnown RBP6.16□□□□□ -1.42
HMGB3-202ENST00000419110 RAB6CQ53S08 254 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 HECTD3Q5T447 861 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 PPP2R2DQ66LE6 453 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 NCBP2-AS2Q69YL0 99 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 HEATR6Q6AI08 1181 aaKnown RBP6.16□□□□□ -1.42
HMGB3-202ENST00000419110 PDE12Q6L8Q7 609 aaKnown RBP6.16□□□□□ -1.42
HMGB3-202ENST00000419110 TTC27Q6P3X3 843 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 KLHDC10Q6PID8 442 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 C1orf228Q6PIY5 440 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 RFX8Q6ZV50 586 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 RTL10Q7L3V2 364 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 SCD5Q86SK9 330 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 CHSY1Q86X52 802 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 MIB1Q86YT6 1006 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 ATPAF2Q8N5M1 289 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 ALLCQ8N6M5 410 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 PLD5Q8N7P1 536 aa6.16□□□□□ -1.42
HMGB3-202ENST00000419110 LEMD2Q8NC56 503 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms