RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 FOXJ1Q92949 421 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 SLC2A11Q9BYW1 496 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 FAM124BQ9H5Z6 455 aaPredicted RBP12.06□□□□□ -0.48
USP4-204ENST00000416417 C6orf106Q9H6K1 298 aaPredicted RBP12.06□□□□□ -0.48
USP4-204ENST00000416417 ABCC13Q9NSE7 274 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 DNAAF2Q9NVR5 837 aaKnown RBP12.06□□□□□ -0.48
USP4-204ENST00000416417 GGA2Q9UJY4 613 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.06□□□□□ -0.48
USP4-204ENST00000416417 CTNND2Q9UQB3 1225 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 ASPMQ8IZT6 3477 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 METTL12A8MUP2 240 aa12.05□□□□□ -0.48
USP4-204ENST00000416417 PPP1R3GB7ZBB8 358 aa12.05□□□□□ -0.48
USP4-204ENST00000416417 PSMA7O14818 248 aa12.05□□□□□ -0.48
USP4-204ENST00000416417 GJB3O75712 270 aa12.05□□□□□ -0.48
USP4-204ENST00000416417 LTFP02788 710 aa12.05□□□□□ -0.48
USP4-204ENST00000416417 PABPC1P11940 636 aaKnown RBP12.05□□□□□ -0.48
USP4-204ENST00000416417 GNSP15586 552 aa12.05□□□□□ -0.48
USP4-204ENST00000416417 TBXAS1P24557 533 aaPredicted RBP12.05□□□□□ -0.48
USP4-204ENST00000416417 ACSL1P33121 698 aa12.05□□□□□ -0.48
USP4-204ENST00000416417 EIF4HQ15056 248 aaKnown RBP12.05□□□□□ -0.48
USP4-204ENST00000416417 PTPRNQ16849 979 aa12.05□□□□□ -0.48
USP4-204ENST00000416417 ADGRF1Q5T601 910 aa12.05□□□□□ -0.48
USP4-204ENST00000416417 MBLAC2Q68D91 279 aa12.05□□□□□ -0.48
USP4-204ENST00000416417 TTI2Q6NXR4 508 aa12.05□□□□□ -0.48
USP4-204ENST00000416417 LAYNQ6UX15 382 aa12.05□□□□□ -0.48
USP4-204ENST00000416417 RABEPKQ7Z6M1 372 aa12.05□□□□□ -0.48
USP4-204ENST00000416417 METTL3Q86U44 580 aaKnown RBP12.05□□□□□ -0.48
USP4-204ENST00000416417 NELFBQ8WX92 580 aa12.05□□□□□ -0.48
USP4-204ENST00000416417 CNGB3Q9NQW8 809 aa12.05□□□□□ -0.48
USP4-204ENST00000416417 ZZEF1O43149 2961 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 A0A1B0GTW7 788 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 A0A1B0GVT2 93 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 UPK3BL1B0FP48 263 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 UPK3BL2E5RIL1 263 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 KCNK3O14649 394 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 NPC1O15118 1278 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 GADD45BO75293 160 aaPredicted RBP12.04□□□□□ -0.48
USP4-204ENST00000416417 MOCS2O96007 188 aaPredicted RBP12.04□□□□□ -0.48
USP4-204ENST00000416417 FYNP06241 537 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 PAEPP09466 180 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 PI4KAP42356 2102 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 CSNK1EP49674 416 aaKnown RBP12.04□□□□□ -0.48
USP4-204ENST00000416417 TBX4P57082 545 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 STIM1Q13586 685 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 CNGA2Q16280 664 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 FAM133BQ5BKY9 247 aaKnown RBP12.04□□□□□ -0.48
USP4-204ENST00000416417 PIK3R6Q5UE93 754 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 MSANTD2Q6P1R3 559 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 DENND1BQ6P3S1 775 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 MMS22LQ6ZRQ5 1243 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 NAXDQ8IW45 347 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 SCUBE3Q8IX30 993 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 CFAP52Q8N1V2 620 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 OR2T3Q8NH03 318 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 DNASE2BQ8WZ79 361 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 DHTKD1Q96HY7 919 aaPredicted RBP12.04□□□□□ -0.48
USP4-204ENST00000416417 PRICKLE1Q96MT3 831 aaPredicted RBP12.04□□□□□ -0.48
USP4-204ENST00000416417 CEP63Q96MT8 703 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 KREMEN1Q96MU8 473 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 NUP58Q9BVL2 599 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 LHX5Q9H2C1 402 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 TMEM245Q9H330 911 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 GAREM1Q9H706 876 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 METTL14Q9HCE5 456 aaKnown RBP12.04□□□□□ -0.48
USP4-204ENST00000416417 ACP6Q9NPH0 428 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 PRSS16Q9NQE7 514 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 ST7Q9NRC1 585 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 SUSD2Q9UGT4 822 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 XPO7Q9UIA9 1087 aaKnown RBP12.04□□□□□ -0.48
USP4-204ENST00000416417 STOML2Q9UJZ1 356 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 KIAA1257Q9ULG3 409 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 PLA2G4CQ9UP65 541 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 NAALADL1Q9UQQ1 740 aa12.04□□□□□ -0.48
USP4-204ENST00000416417 SPEGQ15772 3267 aa12.03□□□□□ -0.48
USP4-204ENST00000416417 BCAT2O15382 392 aaPredicted RBP12.03□□□□□ -0.48
USP4-204ENST00000416417 TIMM44O43615 452 aa12.03□□□□□ -0.48
USP4-204ENST00000416417 ACSL4O60488 711 aa12.03□□□□□ -0.48
USP4-204ENST00000416417 IGLV3-27P01718 113 aa12.03□□□□□ -0.48
USP4-204ENST00000416417 RPS14P62263 151 aaKnown RBP12.03□□□□□ -0.48
USP4-204ENST00000416417 RPS24P62847 133 aaKnown RBP12.03□□□□□ -0.48
USP4-204ENST00000416417 APBA1Q02410 837 aa12.03□□□□□ -0.48
USP4-204ENST00000416417 CAMK2GQ13555 558 aaPredicted RBP12.03□□□□□ -0.48
USP4-204ENST00000416417 TRIP6Q15654 476 aaKnown RBP12.03□□□□□ -0.48
USP4-204ENST00000416417 GJB7Q6PEY0 223 aa12.03□□□□□ -0.48
USP4-204ENST00000416417 KIAA0907Q7Z7F0 614 aaPredicted RBP12.03□□□□□ -0.48
USP4-204ENST00000416417 CARNMT1Q8N4J0 409 aa12.03□□□□□ -0.48
USP4-204ENST00000416417 KDF1Q8NAX2 398 aaPredicted RBP12.03□□□□□ -0.48
USP4-204ENST00000416417 CADM4Q8NFZ8 388 aa12.03□□□□□ -0.48
USP4-204ENST00000416417 DQX1Q8TE96 717 aaKnown RBP12.03□□□□□ -0.48
USP4-204ENST00000416417 WFIKKN2Q8TEU8 576 aa12.03□□□□□ -0.48
USP4-204ENST00000416417 ZCCHC14Q8WYQ9 949 aaKnown RBP12.03□□□□□ -0.48
USP4-204ENST00000416417 FCRL2Q96LA5 508 aaPredicted RBP12.03□□□□□ -0.48
USP4-204ENST00000416417 TIGD1Q96MW7 591 aa12.03□□□□□ -0.48
USP4-204ENST00000416417 INTS2Q9H0H0 1204 aaKnown RBP12.03□□□□□ -0.48
USP4-204ENST00000416417 NUCKS1Q9H1E3 243 aaKnown RBP12.03□□□□□ -0.48
USP4-204ENST00000416417 FNDC3AQ9Y2H6 1198 aaKnown RBP12.03□□□□□ -0.48
USP4-204ENST00000416417 MUC22E2RYF6 1773 aaPredicted RBP12.03□□□□□ -0.48
USP4-204ENST00000416417 WDFY3Q8IZQ1 3526 aa12.03□□□□□ -0.48
USP4-204ENST00000416417 CACNA1EQ15878 2313 aa12.03□□□□□ -0.48
USP4-204ENST00000416417 GOLGA8CPA6NN73 597 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms