RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 MRPL45Q9BRJ2 306 aaKnown RBP15.33■□□□□ 0.04
USP4-203ENST00000415188 SAE1Q9UBE0 346 aaPredicted RBP15.33■□□□□ 0.04
USP4-203ENST00000415188 PIN4Q9Y237 131 aaKnown RBP15.33■□□□□ 0.04
USP4-203ENST00000415188 STARD13Q9Y3M8 1113 aa15.33■□□□□ 0.04
USP4-203ENST00000415188 SNX9Q9Y5X1 595 aa15.33■□□□□ 0.04
USP4-203ENST00000415188 C19orf67A6NJJ6 358 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 H7C0C1 242 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 EOMESO95936 686 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 FAM163BP0C2L3 166 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 ATP5OP48047 213 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 BCAT1P54687 386 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 WDR4P57081 412 aaKnown RBP15.32■□□□□ 0.04
USP4-203ENST00000415188 BASP1P80723 227 aaKnown RBP15.32■□□□□ 0.04
USP4-203ENST00000415188 BST2Q10589 180 aaKnown RBP15.32■□□□□ 0.04
USP4-203ENST00000415188 TAF5Q15542 800 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 PDK4Q16654 411 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 FNBP1LQ5T0N5 605 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 C9orf57Q5W0N0 161 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 TWF2Q6IBS0 349 aaKnown RBP15.32■□□□□ 0.04
USP4-203ENST00000415188 SLC26A9Q7LBE3 791 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 ACOT1Q86TX2 421 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 TTC30AQ86WT1 665 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 CRYBG2Q8N1P7 616 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 FBXO36Q8NEA4 188 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 VN1R2Q8NFZ6 395 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 FAM172AQ8WUF8 416 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 ZNF558Q96NG5 402 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 CYTH2Q99418 400 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 PCDH18Q9HCL0 1135 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 PNPLA8Q9NP80 782 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 CHST12Q9NRB3 414 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 KLC4Q9NSK0 619 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 GDAP2Q9NXN4 497 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 SNTG2Q9NY99 539 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.32■□□□□ 0.04
USP4-203ENST00000415188 KLHL14Q9P2G3 628 aa15.32■□□□□ 0.04
USP4-203ENST00000415188 MEIS3P2A8K0S8 358 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 TM9SF1O15321 606 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 TYROBPO43914 113 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 ZNF189O75820 626 aaPredicted RBP15.31■□□□□ 0.04
USP4-203ENST00000415188 KCNE1P15382 129 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 MSH2P43246 934 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 BCAR1P56945 870 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 DUSP6Q16828 381 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 SPRED3Q2MJR0 410 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 C15orf59Q2T9L4 293 aaPredicted RBP15.31■□□□□ 0.04
USP4-203ENST00000415188 BBS9Q3SYG4 887 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 GALNTL6Q49A17 601 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 XKR4Q5GH76 650 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 PMF1Q6P1K2 205 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 C3orf62Q6ZUJ4 267 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 ANKMY2Q8IV38 441 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 TMEM130Q8N3G9 435 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 PLD5Q8N7P1 536 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 ANKRD52Q8NB46 1076 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 FBF1Q8TES7 1133 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 CENPIQ92674 756 aaPredicted RBP15.31■□□□□ 0.04
USP4-203ENST00000415188 LRRC39Q96DD0 335 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 HSFY1Q96LI6 401 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 PAFAH2Q99487 392 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 TCF25Q9BQ70 676 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 SNRNP25Q9BV90 132 aaKnown RBP15.31■□□□□ 0.04
USP4-203ENST00000415188 KLC2Q9H0B6 622 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 USP29Q9HBJ7 922 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 RXFP1Q9HBX9 757 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 NGRNQ9NPE2 291 aaKnown RBP15.31■□□□□ 0.04
USP4-203ENST00000415188 ENTPD7Q9NQZ7 604 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 LZTS1Q9Y250 596 aa15.31■□□□□ 0.04
USP4-203ENST00000415188 IQANK1A0A1B0GTG1 560 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 HIDE1A8MVS5 230 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 NT5C1B-RDH14C9J2C7 533 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 GOLGA8MH3BSY2 632 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 PIRO00625 290 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 PAPSS1O43252 624 aaPredicted RBP15.3■□□□□ 0.04
USP4-203ENST00000415188 FAM155BO75949 473 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 RECQL4O94761 1208 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 ZBED1O96006 694 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 ALADP13716 330 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 SKIV2L2P42285 1042 aaKnown RBP15.3■□□□□ 0.04
USP4-203ENST00000415188 NR2C2P49116 596 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 RGS7P49802 495 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 MMRN1Q13201 1228 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 DPYSL2Q16555 572 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 MSS51Q4VC12 460 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 HHATQ5VTY9 493 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 LIMS2Q7Z4I7 341 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 FUKQ8N0W3 1084 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 SLC39A11Q8N1S5 342 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 C12orf29Q8N999 325 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 SMRP1Q8NCR6 262 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 MCUQ8NE86 351 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 ZMAT2Q96NC0 199 aaKnown RBP15.3■□□□□ 0.04
USP4-203ENST00000415188 PITPNM3Q9BZ71 974 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 TRIM6Q9C030 488 aaPredicted RBP15.3■□□□□ 0.04
USP4-203ENST00000415188 MLXIPLQ9NP71 852 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 FAM105AQ9NUU6 356 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 SPG21Q9NZD8 308 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 TUBGCP4Q9UGJ1 667 aa15.3■□□□□ 0.04
USP4-203ENST00000415188 A8MXQ7 604 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 FOXO6A8MYZ6 492 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms