RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 RAD51CO43502 376 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 OR5F1O95221 314 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 HOXD10P28358 340 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 ADSLP30566 484 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 SNX7Q9UNH6 387 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 SLC25A12O75746 678 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 DHFRP00374 187 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 C10orf120Q5SQS8 335 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 CBWD2Q8IUF1 395 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 GRPEL2Q8TAA5 225 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 NSUN6Q8TEA1 469 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 MMP19Q99542 508 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 KLF6Q99612 283 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 GABBR1Q9UBS5 961 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 PIN4Q9Y237 131 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 STK36Q9NRP7 1315 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 USP17L3A6NCW0 530 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 USP17L4A6NCW7 530 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 GRAP2O75791 330 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 PCSK1P29120 753 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 USP17L1Q7RTZ2 530 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 GGA3Q9NZ52 723 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 RPH3AQ9Y2J0 694 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 NDUFAF1Q9Y375 327 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 DENND5BQ6ZUT9 1274 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 TMEM179Q6ZVK1 233 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 MARCH7Q9H992 704 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 SSR3Q9UNL2 185 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 DRG1Q9Y295 367 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 ERVV-2B6SEH9 535 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 GLRBP48167 497 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 NCOA4Q13772 614 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 OR2W6PQ8NHA6 318 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 ZIM3Q96PE6 472 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 CDH9Q9ULB4 789 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 GCP02774 474 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 UGT1A5P35504 534 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 LIFRP42702 1097 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 STRA8Q7Z7C7 330 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 ZHX1-C8orf76Q96EF9 292 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 SLITRK1Q96PX8 696 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 MED28Q9H204 178 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 CUEDC1Q9NWM3 386 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 PDHBP11177 359 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 GPD1P21695 349 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 SKIV2L2P42285 1042 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 FASTKQ14296 549 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 ARMC8Q8IUR7 673 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 PEX5LQ8IYB4 626 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 SIPA1Q96FS4 1042 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 PDE8BO95263 885 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 GHRP10912 638 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 ADORA1P30542 326 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 KCNB1Q14721 858 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 HKDC1Q2TB90 917 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 PERM1Q5SV97 790 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 UBQLN1Q9UMX0 589 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 SHOC2Q9UQ13 582 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 ARL5CA6NH57 179 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 TIPRLO75663 272 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 CYP2A7P20853 494 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 ACTR8Q9H981 624 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 METTL5Q9NRN9 209 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 GPN3Q9UHW5 284 aaPredicted RBP13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 KCNH4Q9UQ05 1017 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 RPS2P15880 293 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 HALP42357 657 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 CDH4P55283 916 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 CAV3P56539 151 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 SSTP61278 116 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 KCNV1Q6PIU1 500 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 DLG3Q92796 817 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 RIOK2Q9BVS4 552 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 KCNH1O95259 989 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 FGFR3P22607 806 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 SLC1A6P48664 564 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 DEPDC4Q8N2C3 294 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 DPY30Q9C005 99 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 XKR8Q9H6D3 395 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 PLGRKTQ9HBL7 147 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 CYP4F12Q9HCS2 524 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 INTS10Q9NVR2 710 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 PLIN3O60664 434 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 ADD2P35612 726 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 CLK2P49760 499 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 IL18Q14116 193 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 SAPCD2Q86UD0 394 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 ERMAPQ96PL5 475 aaPredicted RBP13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 NT5C1AQ9BXI3 368 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 CCSER2Q9H7U1 834 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 TIMMDC1Q9NPL8 285 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 PTGFRNQ9P2B2 879 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 SLC2A4P14672 509 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 MAPK10P53779 464 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 ILF2Q12905 390 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 ZBTB6Q15916 424 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 TFDP3Q5H9I0 405 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 LLGL2Q6P1M3 1020 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 KLHL23Q8NBE8 558 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms