RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 OSBPL2Q9H1P3 480 aa6.88□□□□□ -1.31
VPS41-204ENST00000413141 CERS4Q9HA82 394 aa6.88□□□□□ -1.31
VPS41-204ENST00000413141 PRDM16Q9HAZ2 1276 aa6.88□□□□□ -1.31
VPS41-204ENST00000413141 IL21Q9HBE4 155 aa6.88□□□□□ -1.31
VPS41-204ENST00000413141 GDF3Q9NR23 364 aa6.88□□□□□ -1.31
VPS41-204ENST00000413141 MAN1C1Q9NR34 630 aa6.88□□□□□ -1.31
VPS41-204ENST00000413141 SAE1Q9UBE0 346 aaPredicted RBP6.88□□□□□ -1.31
VPS41-204ENST00000413141 OR12D3Q9UGF7 316 aa6.88□□□□□ -1.31
VPS41-204ENST00000413141 XPO7Q9UIA9 1087 aaKnown RBP6.88□□□□□ -1.31
VPS41-204ENST00000413141 MSRAQ9UJ68 235 aa6.88□□□□□ -1.31
VPS41-204ENST00000413141 DNMT3LQ9UJW3 386 aa6.88□□□□□ -1.31
VPS41-204ENST00000413141 DNPEPQ9ULA0 475 aa6.88□□□□□ -1.31
VPS41-204ENST00000413141 HBS1LQ9Y450 684 aaKnown RBP6.88□□□□□ -1.31
VPS41-204ENST00000413141 MFHAS1Q9Y4C4 1052 aa6.88□□□□□ -1.31
VPS41-204ENST00000413141 SNX10Q9Y5X0 201 aa6.88□□□□□ -1.31
VPS41-204ENST00000413141 RANBP2P49792 3224 aaKnown RBP6.87□□□□□ -1.31
VPS41-204ENST00000413141 CLUHO75153 1309 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 CCDC151A5D8V7 595 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 C2orf78A6NCI8 922 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 EPOPA6NHQ4 379 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 MCF2LO15068 1137 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 CCL16O15467 120 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 LRIG2O94898 1065 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 OLFM2O95897 454 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 GAS8O95995 478 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 ITGAVP06756 1048 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 HMBSP08397 361 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 MYBL2P10244 700 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 EPCAMP16422 314 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 ERCC2P18074 760 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 AMPD1P23109 780 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 GABRR2P28476 465 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 BMP8BP34820 402 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 HTR7P34969 479 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 HCAR3P49019 387 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 KPNA1P52294 538 aaPredicted RBP6.87□□□□□ -1.31
VPS41-204ENST00000413141 EIF3EP60228 445 aaKnown RBP6.87□□□□□ -1.31
VPS41-204ENST00000413141 LMNB2Q03252 620 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 GBE1Q04446 702 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 MTA1Q13330 715 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 PTK6Q13882 451 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 BRD3Q15059 726 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 PAFAH1B3Q15102 231 aaKnown RBP6.87□□□□□ -1.31
VPS41-204ENST00000413141 PPP1R7Q15435 360 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 PABPC1LQ4VXU2 614 aaKnown RBP6.87□□□□□ -1.31
VPS41-204ENST00000413141 ARTNQ5T4W7 220 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 PIK3R6Q5UE93 754 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 NUGGCQ68CJ6 796 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 C1orf228Q6PIY5 440 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 SYDE1Q6ZW31 735 aaPredicted RBP6.87□□□□□ -1.31
VPS41-204ENST00000413141 RTL10Q7L3V2 364 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 ADGRD2Q7Z7M1 963 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 IFT20Q8IY31 132 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 GSPT2Q8IYD1 628 aaKnown RBP6.87□□□□□ -1.31
VPS41-204ENST00000413141 TDHQ8IZJ6 230 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 ELMOD1Q8N336 334 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 ALLCQ8N6M5 410 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 ATP6V0D2Q8N8Y2 350 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 ATL2Q8NHH9 583 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 SLC22A17Q8WUG5 538 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 CASKIN2Q8WXE0 1202 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 ARNTL2Q8WYA1 636 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 P3H4Q92791 437 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 PLD4Q96BZ4 506 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 TBC1D31Q96DN5 1066 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 BTN2A3PQ96KV6 586 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 OLFM3Q96PB7 478 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 QKIQ96PU8 341 aaKnown RBP eCLIP6.87□□□□□ -1.31
VPS41-204ENST00000413141 TMEM121Q9BTD3 319 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 NACA2Q9H009 215 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 LMAN2LQ9H0V9 348 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 SLC28A3Q9HAS3 691 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 EPB41L5Q9HCM4 733 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 ASAH2Q9NR71 780 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 ETNK2Q9NVF9 386 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 ARGLU1Q9NWB6 273 aaPredicted RBP6.87□□□□□ -1.31
VPS41-204ENST00000413141 DTLQ9NZJ0 730 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 UTP11Q9Y3A2 253 aaKnown RBP6.87□□□□□ -1.31
VPS41-204ENST00000413141 NEU2Q9Y3R4 380 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 HEY1Q9Y5J3 304 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 HS3ST4Q9Y661 456 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 ANAPC1Q9H1A4 1944 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 MTCL1Q9Y4B5 1905 aaKnown RBP6.87□□□□□ -1.31
VPS41-204ENST00000413141 CEP290O15078 2479 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 LAMA2P24043 3122 aaKnown RBP6.87□□□□□ -1.31
VPS41-204ENST00000413141 CHD7Q9P2D1 2997 aa6.87□□□□□ -1.31
VPS41-204ENST00000413141 HELZP42694 1942 aaKnown RBP6.86□□□□□ -1.31
VPS41-204ENST00000413141 E9PAM4 449 aa6.86□□□□□ -1.31
VPS41-204ENST00000413141 SGK1O00141 431 aa6.86□□□□□ -1.31
VPS41-204ENST00000413141 NRG2O14511 850 aaPredicted RBP6.86□□□□□ -1.31
VPS41-204ENST00000413141 FGF10O15520 208 aaPredicted RBP6.86□□□□□ -1.31
VPS41-204ENST00000413141 DAPK3O43293 454 aa6.86□□□□□ -1.31
VPS41-204ENST00000413141 ERLIN1O75477 346 aa6.86□□□□□ -1.31
VPS41-204ENST00000413141 RFPL2O75678 378 aa6.86□□□□□ -1.31
VPS41-204ENST00000413141 MAP3K6O95382 1288 aa6.86□□□□□ -1.31
VPS41-204ENST00000413141 FGF19O95750 216 aa6.86□□□□□ -1.31
VPS41-204ENST00000413141 POU2F2P09086 479 aa6.86□□□□□ -1.31
VPS41-204ENST00000413141 HNRNPA1P09651 372 aaKnown RBP eCLIP6.86□□□□□ -1.31
VPS41-204ENST00000413141 RBP3P10745 1247 aa6.86□□□□□ -1.31
VPS41-204ENST00000413141 EPHB2P29323 1055 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms