RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 POMPQ9Y244 141 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 CDY2AQ9Y6F7 541 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 CDY1Q9Y6F8 540 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 KAT6AQ92794 2004 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 SLCO1B7G3V0H7 640 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 H7C0C1 242 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 KCNN4O15554 427 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 OPHN1O60890 802 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 APOA4P06727 396 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 YBX3P16989 372 aaKnown RBP eCLIP5.91□□□□□ -1.461e-6■■□□□ 12
CCDC88A-203ENST00000412148 GLDCP23378 1020 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 DNAJB2P25686 324 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 RPL5P46777 297 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 ATP5OP48047 213 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 POLD2P49005 469 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 GLUD2P49448 558 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 BCAR1P56945 870 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 DYNLT1P63172 113 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 PDE1BQ01064 536 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 SP2Q02086 613 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 BIRC2Q13490 618 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 KCNT1Q5JUK3 1230 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 SPANXN3Q5MJ09 141 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 NOL9Q5SY16 702 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 GRTP1Q5TC63 336 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 SNRNP48Q6IEG0 339 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 TRNP1Q6NT89 227 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 EPGNQ6UW88 154 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 OLFML1Q6UWY5 402 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 CATSPERGQ6ZRH7 1159 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 CLEC14AQ86T13 490 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 UNC5BQ8IZJ1 945 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 PCDH19Q8TAB3 1148 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 PPP4R1Q8TF05 950 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 DDI1Q8WTU0 396 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 ACSF2Q96CM8 615 aaPredicted RBP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 ATG4CQ96DT6 458 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 PRICKLE1Q96MT3 831 aaPredicted RBP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 SERPINI1Q99574 410 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 CPNE1Q99829 537 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 CALN1Q9BXU9 219 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 ELOVL4Q9GZR5 314 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 RBM38Q9H0Z9 239 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 EBF3Q9H4W6 596 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 COPG2Q9UBF2 871 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 ARHGAP26Q9UNA1 814 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 DERAQ9Y315 318 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 USP3Q9Y6I4 520 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 EVPLQ92817 2033 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 ALDOAP04075 364 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 MPOP05164 745 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 C6orf222P0C671 652 aaPredicted RBP5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 SMIM18P0DKX4 95 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 MX2P20592 715 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 ITGAXP20702 1163 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 RBL1P28749 1068 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 ABCE1P61221 599 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 LAMTOR4Q0VGL1 99 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 MTMR2Q13614 643 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 LAMB3Q13751 1172 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 APOFQ13790 326 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 MAP7Q14244 749 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 CCDC14Q49A88 953 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 DCAF15Q66K64 600 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 METTL7BQ6UX53 244 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 PACS1Q6VY07 963 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 RAPH1Q70E73 1250 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 MAVSQ7Z434 540 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 BNIPLQ7Z465 357 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 RASSF3Q86WH2 238 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 IFNL1Q8IU54 200 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 FAM81AQ8TBF8 368 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 PRPF31Q8WWY3 499 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 RXFP2Q8WXD0 754 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 CFAP36Q96G28 342 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 FAM84AQ96KN4 292 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 TSPAN18Q96SJ8 248 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 SGIP1Q9BQI5 828 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 MRPS26Q9BYN8 205 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 TIMMDC1Q9NPL8 285 aa5.9□□□□□ -1.46
CCDC88A-203ENST00000412148 PATJQ8NI35 1801 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 A0A0A0MRY4 1105 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 DYTNA2CJ06 578 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 TMEM88BA6NKF7 163 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 ERI2A8K979 691 aaKnown RBP5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 ZBTB42B2RXF5 422 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 TADA2AO75478 443 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 FBXO21O94952 628 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 PFKMP08237 780 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 GARSP41250 739 aaKnown RBP5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 STAT5BP51692 787 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 SLC6A3Q01959 620 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 PDE1CQ14123 709 aaPredicted RBP5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 TMEM132BQ14DG7 1078 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 R3HDM1Q15032 1099 aaKnown RBP5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 TAF5Q15542 800 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 SFT2D3Q587I9 215 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 HSP90AA5PQ58FG0 334 aa5.9□□□□□ -1.47
CCDC88A-203ENST00000412148 FAM102AQ5T9C2 384 aaPredicted RBP5.9□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms