RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 KIAA1841Q6NSI8 718 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 RP9Q8TA86 221 aaKnown RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 FAR1Q8WVX9 515 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 MARCH7Q9H992 704 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 WDR41Q9HAD4 459 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 TAS2R1Q9NYW7 299 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 TBC1D30Q9Y2I9 924 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 KLHL33A6NCF5 533 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 BBIP1A8MTZ0 92 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 PRR29P0C7W0 189 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 EIF2S3P41091 472 aaKnown RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 FOLH1Q04609 750 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 FAM187BQ17R55 369 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 AGKQ53H12 422 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 ZNF746Q6NUN9 644 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 MAB21L3Q8N8X9 362 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 RDH11Q8TC12 318 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 CNKSR1Q969H4 720 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 AGO2Q9UKV8 859 aaKnown RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 FNDC3AQ9Y2H6 1198 aaKnown RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 ZC3H13Q5T200 1668 aaKnown RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 GNL1P36915 607 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 MEIOBQ8N635 442 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 PRCCQ92733 491 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 ZNF224Q9NZL3 707 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 ARHGAP28Q9P2N2 729 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 SLC25A13Q9UJS0 675 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 COQ6Q9Y2Z9 468 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 NEDD4P46934 1319 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 BCORL1Q5H9F3 1711 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 CCNG1P51959 295 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 RPS7P62081 194 aaKnown RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 SMIM5Q71RC9 77 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 C8orf37Q96NL8 207 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 SLC38A2Q96QD8 506 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 IGSF9BQ9UPX0 1349 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 ACVR2BQ13705 512 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 NOP9Q86U38 636 aaKnown RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 RASAL3Q86YV0 1011 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 BHLHE22Q8NFJ8 381 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 TTYH1Q9H313 450 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 AHSPQ9NZD4 102 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 MGAT4AQ9UM21 535 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 NAALADL1Q9UQQ1 740 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 TRIM64CA6NLI5 447 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 ZNF879B4DU55 563 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 PARNO95453 639 aaKnown RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 ETS1P14921 441 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 CCNHP51946 323 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-206ENST00000409809 FBXO36Q8NEA4 188 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 DNAJC11Q9NVH1 559 aa13.18□□□□□ -0.3
COL6A3-206ENST00000409809 SETBP1Q9Y6X0 1596 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 UGT2B11O75310 529 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 ALOX15P16050 662 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-206ENST00000409809 FEN1P39748 380 aaKnown RBP13.17□□□□□ -0.3
COL6A3-206ENST00000409809 MGAT5Q09328 741 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 STK32CQ86UX6 486 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 GJD3Q8N144 294 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 UTP15Q8TED0 518 aaKnown RBP13.17□□□□□ -0.3
COL6A3-206ENST00000409809 ZNF669Q96BR6 464 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-206ENST00000409809 TMEM117Q9H0C3 514 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 KIAA1257Q9ULG3 409 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 CHST10O43529 356 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 CNPP09543 421 aaKnown RBP13.17□□□□□ -0.3
COL6A3-206ENST00000409809 KLHDC7AQ5VTJ3 777 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 NUDT18Q6ZVK8 323 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 LINC00854A0A1B0GVQ3 168 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 COBLL1Q53SF7 1204 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 PROSER1Q86XN7 944 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 CCDC28AQ8IWP9 274 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 TBC1D21Q8IYX1 336 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 WWOXQ9NZC7 414 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 UPB1Q9UBR1 384 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 ST3GAL5Q9UNP4 418 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 TSPAN4O14817 238 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 ATP9BO43861 1147 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 ERCC2P18074 760 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 CD320Q9NPF0 282 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 EEF2KO00418 725 aaKnown RBP13.17□□□□□ -0.3
COL6A3-206ENST00000409809 FAM228AQ86W67 206 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 EDC3Q96F86 508 aaKnown RBP13.17□□□□□ -0.3
COL6A3-206ENST00000409809 ERI2A8K979 691 aaKnown RBP13.17□□□□□ -0.3
COL6A3-206ENST00000409809 SWI5Q1ZZU3 235 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 TTC29Q8NA56 475 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-206ENST00000409809 C1QTNF1Q9BXJ1 281 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 ADAM28Q9UKQ2 775 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.17□□□□□ -0.3
COL6A3-206ENST00000409809 SLC30A1Q9Y6M5 507 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 A0A087X1B8 175 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 PCP4L1A6NKN8 68 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 KPNA6O60684 536 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 SERPINF2P08697 491 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 MYL9P24844 172 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 KLRC1P26715 233 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 ERFP50548 548 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 OVGP1Q12889 678 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 PTRHD1Q6GMV3 140 aaKnown RBP13.17□□□□□ -0.3
COL6A3-206ENST00000409809 FAM180AQ6UWF9 173 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 RIPOR1Q6ZS17 1223 aa13.17□□□□□ -0.3
COL6A3-206ENST00000409809 DNAJB7Q7Z6W7 309 aaPredicted RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms