RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 TCN1P20061 433 aaPredicted RBP21.6■■□□□ 1.05
CTCF-202ENST00000401394 HDAC4P56524 1084 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 WASHC5Q12768 1159 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 PDK3Q15120 406 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 STXBP2Q15833 593 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 PPP1R26Q5T8A7 1209 aaPredicted RBP21.6■■□□□ 1.05
CTCF-202ENST00000401394 ACOT1Q86TX2 421 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 PLIN3O60664 434 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 FOLH1Q04609 750 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 GSTA3Q16772 222 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 IYDQ6PHW0 289 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 ZPBP2Q6X784 338 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 AGAP3Q96P47 875 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 KLHL4Q9C0H6 718 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 ACAD9Q9H845 621 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 ZNF180Q9UJW8 692 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 NME7Q9Y5B8 376 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 FER1L6Q2WGJ9 1857 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 COL11A1P12107 1806 aaPredicted RBP21.6■■□□□ 1.05
CTCF-202ENST00000401394 CCDC160A6NGH7 325 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 ZBTB42B2RXF5 422 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 ZNF195O14628 629 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 CFLARO15519 480 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 IL1BP01584 269 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 LGSNQ5TDP6 509 aa21.6■■□□□ 1.05
CTCF-202ENST00000401394 NIFKQ9BYG3 293 aaKnown RBP21.6■■□□□ 1.05
CTCF-202ENST00000401394 MED7O43513 233 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 MAFO75444 373 aaPredicted RBP21.59■■□□□ 1.05
CTCF-202ENST00000401394 UQCRBP14927 111 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 SAT1P21673 171 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 TFDP2Q14188 446 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 STILQ15468 1287 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 TMEM198Q66K66 360 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 CCDC185Q8N715 623 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 LENG8Q96PV6 779 aaPredicted RBP21.59■■□□□ 1.05
CTCF-202ENST00000401394 AGAP2Q99490 1192 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 NRDE2Q9H7Z3 1164 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP21.59■■□□□ 1.05
CTCF-202ENST00000401394 CHRNGP07510 517 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 L1CAMP32004 1257 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 PPP2R5DQ14738 602 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 LARP7Q4G0J3 582 aaKnown RBP eCLIP21.59■■□□□ 1.05
CTCF-202ENST00000401394 GJC2Q5T442 439 aaPredicted RBP21.59■■□□□ 1.05
CTCF-202ENST00000401394 PPP1R2P3Q6NXS1 205 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 PACS1Q6VY07 963 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 GALNT4Q8N4A0 578 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 C7orf31Q8N865 590 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 NAT14Q8WUY8 206 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 BCO2Q9BYV7 579 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 COG4Q9H9E3 785 aa21.59■■□□□ 1.05
CTCF-202ENST00000401394 LTFP02788 710 aa21.58■■□□□ 1.05
CTCF-202ENST00000401394 PGK2P07205 417 aa21.58■■□□□ 1.05
CTCF-202ENST00000401394 RABGGTBP53611 331 aa21.58■■□□□ 1.05
CTCF-202ENST00000401394 PITX1P78337 314 aaPredicted RBP21.58■■□□□ 1.05
CTCF-202ENST00000401394 MRPS22P82650 360 aaKnown RBP21.58■■□□□ 1.05
CTCF-202ENST00000401394 ITGA7Q13683 1181 aa21.58■■□□□ 1.05
CTCF-202ENST00000401394 GOLGA7BQ2TAP0 167 aa21.58■■□□□ 1.05
CTCF-202ENST00000401394 TBC1D25Q3MII6 688 aa21.58■■□□□ 1.05
CTCF-202ENST00000401394 ACAD11Q709F0 780 aa21.58■■□□□ 1.05
CTCF-202ENST00000401394 ARHGAP22Q7Z5H3 698 aa21.58■■□□□ 1.05
CTCF-202ENST00000401394 SPATA24Q86W54 205 aa21.58■■□□□ 1.05
CTCF-202ENST00000401394 TTC30AQ86WT1 665 aa21.58■■□□□ 1.05
CTCF-202ENST00000401394 CNKSR2Q8WXI2 1034 aa21.58■■□□□ 1.05
CTCF-202ENST00000401394 MPP4Q96JB8 637 aa21.58■■□□□ 1.05
CTCF-202ENST00000401394 PCDHA11Q9Y5I1 949 aa21.58■■□□□ 1.05
CTCF-202ENST00000401394 GOT1P17174 413 aa21.58■■□□□ 1.04
CTCF-202ENST00000401394 MPZL3Q6UWV2 235 aa21.58■■□□□ 1.04
CTCF-202ENST00000401394 KYAT3Q6YP21 454 aaKnown RBP21.58■■□□□ 1.04
CTCF-202ENST00000401394 METTL25Q8N6Q8 603 aa21.58■■□□□ 1.04
CTCF-202ENST00000401394 CNBD2Q96M20 576 aa21.58■■□□□ 1.04
CTCF-202ENST00000401394 TEX13BQ9BXU2 312 aa21.58■■□□□ 1.04
CTCF-202ENST00000401394 RPF1Q9H9Y2 349 aaKnown RBP21.58■■□□□ 1.04
CTCF-202ENST00000401394 MOCS1Q9NZB8 636 aa21.58■■□□□ 1.04
CTCF-202ENST00000401394 SPAG6O75602 509 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 STAG3L1P0CL83 205 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 PTPRAP18433 802 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 PGM2L1Q6PCE3 622 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 TMC7Q7Z402 723 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 ST13P4Q8IZP2 240 aaPredicted RBP21.57■■□□□ 1.04
CTCF-202ENST00000401394 SNX31Q8N9S9 440 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 ZNF280CQ8ND82 737 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 APOL2Q9BQE5 337 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 DMAP1Q9NPF5 467 aaPredicted RBP21.57■■□□□ 1.04
CTCF-202ENST00000401394 SYBUQ9NX95 663 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 C15orf38-AP3S2A0A0A6YYH1 394 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 NDC80O14777 642 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 PAPSS1O43252 624 aaPredicted RBP21.57■■□□□ 1.04
CTCF-202ENST00000401394 JUNP05412 331 aaKnown RBP21.57■■□□□ 1.04
CTCF-202ENST00000401394 TSHRP16473 764 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 SLC5A9Q2M3M2 681 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 ARPINQ7Z6K5 226 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 HPDLQ96IR7 371 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 FRMD8P1Q9BZ68 369 aaPredicted RBP21.57■■□□□ 1.04
CTCF-202ENST00000401394 GRIP2Q9C0E4 1043 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 PTPRHQ9HD43 1115 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 MTMR10Q9NXD2 777 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 TRDMT1O14717 391 aaKnown RBP21.57■■□□□ 1.04
CTCF-202ENST00000401394 PEX1O43933 1283 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 ITGA2BP08514 1039 aa21.57■■□□□ 1.04
CTCF-202ENST00000401394 MAGEA3P43357 314 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms