RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 TASP1Q9H6P5 420 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 UBE2ZQ9H832 354 aaPredicted RBP14.72□□□□□ -0.05
SKA1-202ENST00000398452 WDR6Q9NNW5 1121 aaKnown RBP14.72□□□□□ -0.05
SKA1-202ENST00000398452 GPATCH2LQ9NWQ4 482 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 HCFC1R1Q9NWW0 138 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 SH3BP1Q9Y3L3 701 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 BDP1A6H8Y1 2624 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 C2orf78A6NCI8 922 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 EEF2KO00418 725 aaKnown RBP14.71□□□□□ -0.05
SKA1-202ENST00000398452 ZNF185O15231 689 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 TADA3O75528 432 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 ZFXP17010 805 aaPredicted RBP14.71□□□□□ -0.05
SKA1-202ENST00000398452 COL9A1P20849 921 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 TPI1P60174 286 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 ITIH3Q06033 890 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 SCAPQ12770 1279 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 TEAD2Q15562 447 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 PPP2R5EQ16537 467 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 DPYSL2Q16555 572 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 RAB6CQ53S08 254 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 OTUD1Q5VV17 481 aaPredicted RBP14.71□□□□□ -0.05
SKA1-202ENST00000398452 TXNRD3NBQ6F5E7 133 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 GAREM2Q75VX8 874 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 VSIG1Q86XK7 387 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 RASGEF1CQ8N431 466 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 ARL14EPQ8N8R7 260 aaPredicted RBP14.71□□□□□ -0.05
SKA1-202ENST00000398452 TTC16Q8NEE8 873 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 VN1R2Q8NFZ6 395 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 RAPGEF5Q92565 580 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 BTN2A3PQ96KV6 586 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 RIPOR3Q96MK2 946 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 ZNF670Q9BS34 389 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 LRRC3Q9BY71 257 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 SIK2Q9H0K1 926 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 RAB6CQ9H0N0 254 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 PRDM16Q9HAZ2 1276 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 ARHGEF38Q9NXL2 777 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 CLDND1Q9NY35 253 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 DONSONQ9NYP3 566 aa14.71□□□□□ -0.05
SKA1-202ENST00000398452 RCOR3Q9P2K3 495 aaPredicted RBP14.71□□□□□ -0.05
SKA1-202ENST00000398452 MTCL1Q9Y4B5 1905 aaKnown RBP14.7□□□□□ -0.06
SKA1-202ENST00000398452 TYW5A2RUC4 315 aaKnown RBP14.7□□□□□ -0.06
SKA1-202ENST00000398452 KCNU1A8MYU2 1149 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 H3BQ06 376 aaPredicted RBP14.7□□□□□ -0.06
SKA1-202ENST00000398452 KRIT1O00522 736 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 FANCGO15287 622 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 PAGE1O75459 146 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 IRF1P10914 325 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 GJA1P17302 382 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 FSHRP23945 695 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 HTR7P34969 479 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 GTF2F1P35269 517 aaKnown RBP eCLIP14.7□□□□□ -0.06
SKA1-202ENST00000398452 ADAM15Q13444 863 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 MFSD7Q6UXD7 560 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 TMEM150AQ86TG1 271 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 SLC13A5Q86YT5 568 aaPredicted RBP14.7□□□□□ -0.06
SKA1-202ENST00000398452 TTC13Q8NBP0 860 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 SHKBP1Q8TBC3 707 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 ZNF707Q96C28 371 aaPredicted RBP14.7□□□□□ -0.06
SKA1-202ENST00000398452 SLC39A13Q96H72 371 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 MS4A14Q96JA4 679 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 FCRL2Q96LA5 508 aaPredicted RBP14.7□□□□□ -0.06
SKA1-202ENST00000398452 OSBPL2Q9H1P3 480 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 EPHX3Q9H6B9 360 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 PCDH18Q9HCL0 1135 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 HOMER3Q9NSC5 361 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 SMPD4Q9NXE4 827 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 CALCOCO1Q9P1Z2 691 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 OR12D3Q9UGF7 316 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 TTC7AQ9ULT0 858 aaPredicted RBP14.7□□□□□ -0.06
SKA1-202ENST00000398452 EFR3BQ9Y2G0 817 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 ZNF510Q9Y2H8 683 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 CPQQ9Y646 472 aa14.7□□□□□ -0.06
SKA1-202ENST00000398452 hCG_1818297A0A087WSY0 165 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 ZNF487B1APH4 448 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 CCDC188H7C350 402 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 APOL1O14791 398 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 L1CAMP32004 1257 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 PTPN7P35236 360 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 TUBB4BP68371 445 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 SLC7A9P82251 487 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 RBM10P98175 930 aaKnown RBP14.69□□□□□ -0.06
SKA1-202ENST00000398452 KCNC3Q14003 757 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 DPYSL3Q14195 570 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 DCAF12L1Q5VU92 463 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 RWDD4Q6NW29 188 aaKnown RBP14.69□□□□□ -0.06
SKA1-202ENST00000398452 BZW1Q7L1Q6 419 aaKnown RBP14.69□□□□□ -0.06
SKA1-202ENST00000398452 GPR149Q86SP6 731 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 CHSY1Q86X52 802 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 CREG2Q8IUH2 290 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 CMTM8Q8IZV2 173 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 KCTD15Q96SI1 283 aaPredicted RBP14.69□□□□□ -0.06
SKA1-202ENST00000398452 CYP2S1Q96SQ9 504 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 APOL5Q9BWW9 433 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 CARD6Q9BX69 1037 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 KLF16Q9BXK1 252 aaPredicted RBP14.69□□□□□ -0.06
SKA1-202ENST00000398452 HEMGNQ9BXL5 484 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 ADAM33Q9BZ11 813 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 CATSPERBQ9H7T0 1116 aa14.69□□□□□ -0.06
SKA1-202ENST00000398452 L2HGDHQ9H9P8 463 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms