RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 BNIPLQ7Z465 357 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 PHLDB2Q86SQ0 1253 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 EMC1Q8N766 993 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 RPLP0P6Q8NHW5 317 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 USP33Q8TEY7 942 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 CFAP57Q96MR6 1250 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 TBCBQ99426 244 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 SELENOOQ9BVL4 669 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 XPO7Q9UIA9 1087 aaKnown RBP22.52■■□□□ 1.2
CLN3-207ENST00000395653 PAXBP1Q9Y5B6 917 aa22.52■■□□□ 1.2
CLN3-207ENST00000395653 TCRBV5S1A1TA0A578 114 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 C2CD4BA6NLJ0 364 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 HNRNPH3P31942 346 aaKnown RBP22.51■■□□□ 1.19
CLN3-207ENST00000395653 MRPS21P82921 87 aaKnown RBP22.51■■□□□ 1.19
CLN3-207ENST00000395653 SATB1Q01826 763 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 DEUP1Q05D60 604 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 ZNF528Q3MIS6 628 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 MS4A13Q5J8X5 152 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 BRMS1LQ5PSV4 323 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 C10orf76Q5T2E6 689 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 RNF43Q68DV7 783 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 VPS36Q86VN1 386 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 GAS2L3Q86XJ1 694 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 SFTPA1Q8IWL2 248 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 DRC7Q8IY82 874 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 HJURPQ8NCD3 748 aaPredicted RBP22.51■■□□□ 1.19
CLN3-207ENST00000395653 JOSD2Q8TAC2 188 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 ACDQ96AP0 544 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 TRIM5Q9C035 493 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 STARD13Q9Y3M8 1113 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 CACNA1IQ9P0X4 2223 aa22.51■■□□□ 1.19
CLN3-207ENST00000395653 TYW5A2RUC4 315 aaKnown RBP22.5■■□□□ 1.19
CLN3-207ENST00000395653 SIGLEC16A6NMB1 481 aa22.5■■□□□ 1.19
CLN3-207ENST00000395653 TMCO5BA8MYB1 307 aa22.5■■□□□ 1.19
CLN3-207ENST00000395653 AP5Z1O43299 807 aa22.5■■□□□ 1.19
CLN3-207ENST00000395653 ENDOD1O94919 500 aa22.5■■□□□ 1.19
CLN3-207ENST00000395653 TPM1P09493 284 aa22.5■■□□□ 1.19
CLN3-207ENST00000395653 CHRM1P11229 460 aaPredicted RBP22.5■■□□□ 1.19
CLN3-207ENST00000395653 PDGFRAP16234 1089 aa22.5■■□□□ 1.19
CLN3-207ENST00000395653 SDC4P31431 198 aa22.5■■□□□ 1.19
CLN3-207ENST00000395653 PTPN9P43378 593 aa22.5■■□□□ 1.19
CLN3-207ENST00000395653 SGSHP51688 502 aa22.5■■□□□ 1.19
CLN3-207ENST00000395653 ARID5BQ14865 1188 aa22.5■■□□□ 1.19
CLN3-207ENST00000395653 DNAJC24Q6P3W2 148 aa22.5■■□□□ 1.19
CLN3-207ENST00000395653 CHSY1Q86X52 802 aa22.5■■□□□ 1.19
CLN3-207ENST00000395653 KCNV2Q8TDN2 545 aa22.5■■□□□ 1.19
CLN3-207ENST00000395653 RXFP2Q8WXD0 754 aa22.5■■□□□ 1.19
CLN3-207ENST00000395653 PRICKLE1Q96MT3 831 aaPredicted RBP22.5■■□□□ 1.19
CLN3-207ENST00000395653 ARHGEF38Q9NXL2 777 aa22.5■■□□□ 1.19
CLN3-207ENST00000395653 RTN2O75298 545 aa22.49■■□□□ 1.19
CLN3-207ENST00000395653 GJB6O95452 261 aa22.49■■□□□ 1.19
CLN3-207ENST00000395653 SP9P0CG40 484 aa22.49■■□□□ 1.19
CLN3-207ENST00000395653 TACR2P21452 398 aa22.49■■□□□ 1.19
CLN3-207ENST00000395653 RRM1P23921 792 aa22.49■■□□□ 1.19
CLN3-207ENST00000395653 RDXP35241 583 aaKnown RBP22.49■■□□□ 1.19
CLN3-207ENST00000395653 RFC1P35251 1148 aaPredicted RBP22.49■■□□□ 1.19
CLN3-207ENST00000395653 KIR2DL1P43626 348 aaPredicted RBP22.49■■□□□ 1.19
CLN3-207ENST00000395653 SEC13P55735 322 aa22.49■■□□□ 1.19
CLN3-207ENST00000395653 CSTF1Q05048 431 aaKnown RBP22.49■■□□□ 1.19
CLN3-207ENST00000395653 HSF5Q4G112 596 aaPredicted RBP22.49■■□□□ 1.19
CLN3-207ENST00000395653 RAP1GAP2Q684P5 730 aa22.49■■□□□ 1.19
CLN3-207ENST00000395653 ZNF557Q8N988 423 aaPredicted RBP22.49■■□□□ 1.19
CLN3-207ENST00000395653 DNAJC7Q99615 494 aa22.49■■□□□ 1.19
CLN3-207ENST00000395653 PRMT1Q99873 361 aaKnown RBP22.49■■□□□ 1.19
CLN3-207ENST00000395653 ANP32EQ9BTT0 268 aa22.49■■□□□ 1.19
CLN3-207ENST00000395653 WDCPQ9H6R7 721 aa22.49■■□□□ 1.19
CLN3-207ENST00000395653 CLEC4EQ9ULY5 219 aa22.49■■□□□ 1.19
CLN3-207ENST00000395653 TBL1XO60907 577 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 TDGF1P13385 188 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 CCDC14Q49A88 953 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 C2orf27AQ580R0 203 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 PPP1R15BQ5SWA1 713 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 WDR59Q6PJI9 974 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 SYT13Q7L8C5 426 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 OR8K1Q8NGG5 319 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 TKTL2Q9H0I9 626 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 ISCUQ9H1K1 167 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 C2orf42Q9NWW7 574 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 ARHGAP20Q9P2F6 1191 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 ADAMTS1Q9UHI8 967 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 PRRT4C9JH25 899 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 F5H5T6 163 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 PAGE1O75459 146 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 ADCY5O95622 1261 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 FTLP02792 175 aaPredicted RBP22.48■■□□□ 1.19
CLN3-207ENST00000395653 PLEKP08567 350 aaPredicted RBP22.48■■□□□ 1.19
CLN3-207ENST00000395653 GPD1P21695 349 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 ATP11AP98196 1134 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 TSSK4Q6SA08 328 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 STRADAQ7RTN6 431 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 ANKS1BQ7Z6G8 1248 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 LGI2Q8N0V4 545 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 IL17RCQ8NAC3 791 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 ATOH1Q92858 354 aaPredicted RBP22.48■■□□□ 1.19
CLN3-207ENST00000395653 MYEOVQ96EZ4 313 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 TRIM11Q96F44 468 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 MCEEQ96PE7 176 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 FAM126AQ9BYI3 521 aaPredicted RBP22.48■■□□□ 1.19
CLN3-207ENST00000395653 PARVAQ9NVD7 372 aa22.48■■□□□ 1.19
CLN3-207ENST00000395653 ANKRD62A6NC57 917 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms