RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 THG1LQ9NWX6 298 aaKnown RBP7.27□□□□□ -1.25
LIMA1-202ENST00000394943 GRID2IPA4D2P6 1211 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 FGF10O15520 208 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-202ENST00000394943 NFATC1O95644 943 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 NCAM1P13591 858 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 IL1R2P27930 398 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 SDC4P31431 198 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 CHKAP35790 457 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 MAGEA1P43355 309 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 TFF2Q03403 129 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 E2F5Q15329 346 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 MPPE1Q53F39 396 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 GET4Q7L5D6 327 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-202ENST00000394943 RNF135Q8IUD6 432 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 CPLX3Q8WVH0 158 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 CTNNBL1Q8WYA6 563 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-202ENST00000394943 CFAP57Q96MR6 1250 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 MCEEQ96PE7 176 aa7.27□□□□□ -1.25
LIMA1-202ENST00000394943 DDX56Q9NY93 547 aaKnown RBP7.27□□□□□ -1.25
LIMA1-202ENST00000394943 GOLGA6L9A6NEM1 432 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-202ENST00000394943 PDGFRAP16234 1089 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 SULT1E1P49888 294 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 CDH4P55283 916 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 TDRD12Q587J7 1177 aaKnown RBP7.26□□□□□ -1.25
LIMA1-202ENST00000394943 ERMARDQ5T6L9 678 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 MEI1Q5TIA1 1274 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 CXorf57Q6NSI4 855 aaKnown RBP7.26□□□□□ -1.25
LIMA1-202ENST00000394943 LRRC49Q8IUZ0 686 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 RASGEF1CQ8N431 466 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 WFIKKN2Q8TEU8 576 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 IRF7Q92985 503 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 TADA1Q96BN2 335 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 LRRC19Q9H756 370 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 ECT2Q9H8V3 914 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 PDFQ9HBH1 243 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 CD320Q9NPF0 282 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 TBX18O95935 607 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 TUBB4AP04350 444 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 RHOQP17081 205 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 TACR2P21452 398 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 CORO1AP31146 461 aaKnown RBP7.26□□□□□ -1.25
LIMA1-202ENST00000394943 GAD2Q05329 585 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 RUNX3Q13761 415 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 DHCR24Q15392 516 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 PREPLQ4J6C6 727 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-202ENST00000394943 CPA6Q8N4T0 437 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 FAM172AQ8WUF8 416 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 CYP2S1Q96SQ9 504 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 HCN2Q9UL51 889 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 PPP2R2CQ9Y2T4 447 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 MIF4GDA9UHW6 222 aaKnown RBP7.26□□□□□ -1.25
LIMA1-202ENST00000394943 AKR1B10O60218 316 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 MBL2P11226 248 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-202ENST00000394943 MIPP30301 263 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 AVPR1AP37288 418 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 NDST2P52849 883 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 DEUP1Q05D60 604 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 CCINQ13939 588 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 IFI16Q16666 785 aaKnown RBP7.26□□□□□ -1.25
LIMA1-202ENST00000394943 C10orf120Q5SQS8 335 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 KIAA1524Q8TCG1 905 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 RNF139Q8WU17 664 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 EZH1Q92800 747 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-202ENST00000394943 MYEOVQ96EZ4 313 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 OLFM3Q96PB7 478 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 TRMT61BQ9BVS5 477 aaKnown RBP7.26□□□□□ -1.25
LIMA1-202ENST00000394943 KCNH6Q9H252 994 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 OSGEPQ9NPF4 335 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 CFAP97Q9P2B7 532 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 LSM7Q9UK45 103 aaKnown RBP7.26□□□□□ -1.25
LIMA1-202ENST00000394943 ARIH1Q9Y4X5 557 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-202ENST00000394943 SCN8AQ9UQD0 1980 aa7.26□□□□□ -1.25
LIMA1-202ENST00000394943 MAN2B1O00754 1011 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 TIMM44O43615 452 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 ZMPSTE24O75844 475 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 SSTR3P32745 418 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 CSNK1DP48730 415 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 SIGLEC14Q08ET2 396 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 KLF1Q13351 362 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 EIF4HQ15056 248 aaKnown RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 DCAF6Q58WW2 860 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 BBS7Q8IWZ6 715 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 SYCE1Q8N0S2 351 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 CCDC185Q8N715 623 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 HJURPQ8NCD3 748 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 EXD1Q8NHP7 514 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 TSGA13Q96PP4 275 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 PSMB7Q99436 277 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 GABRG3Q99928 467 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 FRMD8P1Q9BZ68 369 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 TRIM7Q9C029 511 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 NOL6Q9H6R4 1146 aaKnown RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 PRMT8Q9NR22 394 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 SFMBT1Q9UHJ3 866 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 USP18Q9UMW8 372 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 ZKSCAN5Q9Y2L8 839 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 SLC12A8A0AV02 714 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 ILVBLA1L0T0 632 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 OTOL1A6NHN0 477 aaPredicted RBP7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms