RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.63□□□□□ -0.71
COL6A3-205ENST00000392004 ZNF831Q5JPB2 1677 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 BDP1A6H8Y1 2624 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 HIDE1A8MVS5 230 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 BUD23O43709 281 aaKnown RBP10.63□□□□□ -0.71
COL6A3-205ENST00000392004 USP12O75317 370 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 FBXO21O94952 628 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 GZMAP12544 262 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 KDSRQ06136 332 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 GRM2Q14416 872 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 C2orf27AQ580R0 203 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 ANKRD20A8PQ5CZ79 823 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 MFSD7Q6UXD7 560 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 PRUNE1Q86TP1 453 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 ANKMY2Q8IV38 441 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 GRK7Q8WTQ7 553 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 SUSD3Q96L08 255 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 RPL10LQ96L21 214 aaKnown RBP10.63□□□□□ -0.71
COL6A3-205ENST00000392004 ISCUQ9H1K1 167 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 THG1LQ9NWX6 298 aaKnown RBP10.63□□□□□ -0.71
COL6A3-205ENST00000392004 DNMT3LQ9UJW3 386 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 TPX2Q9ULW0 747 aaKnown RBP10.63□□□□□ -0.71
COL6A3-205ENST00000392004 ZNF623O75123 536 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 BEST1O76090 585 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 SCTRP47872 440 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 MRPS5P82675 430 aaKnown RBP10.62□□□□□ -0.71
COL6A3-205ENST00000392004 PDE1BQ01064 536 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 TAP1Q03518 808 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 ANKRD42Q8N9B4 389 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 CRTAC1Q9NQ79 661 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 HCFC1R1Q9NWW0 138 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 UBA6A0AVT1 1052 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-205ENST00000392004 TTI1O43156 1089 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 TBL1XO60907 577 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 PIGRP01833 764 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 RARAP10276 462 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 MAMLD1Q13495 774 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 TMEM240Q5SV17 173 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 AGBL2Q5U5Z8 902 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 EMC10Q5UCC4 262 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 SYPL2Q5VXT5 272 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 LINGO4Q6UY18 593 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 PRR23CQ6ZRP0 262 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 TAS2R42Q7RTR8 314 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 PYROXD2Q8N2H3 581 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 ARMC5Q96C12 935 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 PBKQ96KB5 322 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 SERPINB11Q96P15 392 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 CNOT10Q9H9A5 744 aaKnown RBP10.62□□□□□ -0.71
COL6A3-205ENST00000392004 ABCC13Q9NSE7 274 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 UXTQ9UBK9 157 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-205ENST00000392004 MYH7BA7E2Y1 1941 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 NDC80O14777 642 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 TBC1D4O60343 1298 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 SYNCRIPO60506 623 aaKnown RBP10.62□□□□□ -0.71
COL6A3-205ENST00000392004 CAND2O75155 1236 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 LCA5LO95447 670 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 F9P00740 461 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 PFKMP08237 780 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 IRS1P35568 1242 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 SEC13P55735 322 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 MAXP61244 160 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 MAGOHP61326 146 aaKnown RBP10.62□□□□□ -0.71
COL6A3-205ENST00000392004 SATB1Q01826 763 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 NPNTQ6UXI9 565 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 RAPH1Q70E73 1250 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 SPRED2Q7Z698 418 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 DNAJC5GQ8N7S2 189 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 TDRD5Q8NAT2 981 aaKnown RBP10.62□□□□□ -0.71
COL6A3-205ENST00000392004 ZNF461Q8TAF7 563 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 ACTL9Q8TC94 416 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 FCRL2Q96LA5 508 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-205ENST00000392004 FBXL18Q96ME1 805 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 CATSPERBQ9H7T0 1116 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 DERAQ9Y315 318 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 SYN3O14994 580 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 MAP3K13O43283 966 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 PROSCO94903 275 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 LSM8O95777 96 aaKnown RBP10.62□□□□□ -0.71
COL6A3-205ENST00000392004 SLC2A3P11169 496 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 KCNE1P15382 129 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 C1QBPQ07021 282 aaKnown RBP10.62□□□□□ -0.71
COL6A3-205ENST00000392004 WLSQ5T9L3 541 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 BZW1Q7L1Q6 419 aaKnown RBP10.62□□□□□ -0.71
COL6A3-205ENST00000392004 MON1AQ86VX9 555 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 HS6ST3Q8IZP7 471 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 BLOC1S5Q8TDH9 187 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 SEZ6LQ9BYH1 1024 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 NFKBIZQ9BYH8 718 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 NSRP1Q9H0G5 558 aaKnown RBP10.62□□□□□ -0.71
COL6A3-205ENST00000392004 SAYSD1Q9NPB0 183 aa10.62□□□□□ -0.71
COL6A3-205ENST00000392004 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.62□□□□□ -0.71
COL6A3-205ENST00000392004 PAPSS1O43252 624 aaPredicted RBP10.61□□□□□ -0.71
COL6A3-205ENST00000392004 RAMP2O60895 175 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 SOD2P04179 222 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 PIRTP0C851 137 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 CORO1AP31146 461 aaKnown RBP10.61□□□□□ -0.71
COL6A3-205ENST00000392004 KCNQ1P51787 676 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 ERVFC1P60507 584 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 OTUD4Q01804 1114 aaKnown RBP10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms