RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ZNF7P17097 686 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 SCTRP47872 440 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 CD151P48509 253 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 RAB27AP51159 221 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 PWP2Q15269 919 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 TAB1Q15750 504 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 TRIM63Q969Q1 353 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 FAM136AQ96C01 138 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 COPG2Q9UBF2 871 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 AP3M1Q9Y2T2 418 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 NUDT14O95848 222 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 ATP5BP06576 529 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 SERPINF2P08697 491 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 PRLRP16471 622 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 ATG4AQ8WYN0 398 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 PRKD2Q9BZL6 878 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 PIF1Q9H611 641 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 RXFP1Q9HBX9 757 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 CNTNAP2Q9UHC6 1331 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 ERN1O75460 977 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 OR6A2O95222 327 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 MAPKAPK2P49137 400 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 HNMTP50135 292 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 CCNG2Q16589 344 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 MARC1Q5VT66 337 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 DSG4Q86SJ6 1040 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 HEATR4Q86WZ0 1026 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 OR56A4Q8NGH8 313 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 MIEF2Q96C03 454 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 NSMCE2Q96MF7 247 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 AKAP7Q9P0M2 348 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 MBD2Q9UBB5 411 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 ZDHHC9Q9Y397 364 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 KPNA4O00629 521 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 GUCY1B2O75343 617 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 LBPP18428 481 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 HNRNPH1P31943 449 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 MMP14P50281 582 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 SCNN1BP51168 640 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 ACOX1Q15067 660 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 MTDHQ86UE4 582 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 ZNF34Q8IZ26 560 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 TMC2Q8TDI7 906 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 ACTRT2Q8TDY3 377 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 ASB2Q96Q27 587 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 TMEM237Q96Q45 408 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 TMEM121Q9BTD3 319 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 OXCT2Q9BYC2 517 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 A1CFQ9NQ94 594 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 RABGEF1Q9UJ41 708 aa13.09□□□□□ -0.31
CCDC88C-204ENST00000389857 RBAK-RBAKDNI3L0D1 243 aa13.08□□□□□ -0.31
CCDC88C-204ENST00000389857 MYL4P12829 197 aa13.08□□□□□ -0.31
CCDC88C-204ENST00000389857 TKTL1P51854 596 aa13.08□□□□□ -0.31
CCDC88C-204ENST00000389857 NT5DC3Q86UY8 548 aa13.08□□□□□ -0.31
CCDC88C-204ENST00000389857 FBXO39Q8N4B4 442 aa13.08□□□□□ -0.31
CCDC88C-204ENST00000389857 FNDC5Q8NAU1 212 aa13.08□□□□□ -0.31
CCDC88C-204ENST00000389857 ENKURQ8TC29 256 aa13.08□□□□□ -0.31
CCDC88C-204ENST00000389857 BCL2L14Q9BZR8 327 aa13.08□□□□□ -0.31
CCDC88C-204ENST00000389857 NDUFAF1Q9Y375 327 aa13.08□□□□□ -0.31
CCDC88C-204ENST00000389857 LRRC14BA6NHZ5 514 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 WWP2O00308 870 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 KATNA1O75449 491 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 RTN3O95197 1032 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 JCHAINP01591 159 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 PTPN4P29074 926 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 GPR15P49685 360 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 Q4G0T1 1027 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 RIPOR1Q6ZS17 1223 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 LPCAT1Q8NF37 534 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 DNAJC1Q96KC8 554 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 REXO4Q9GZR2 422 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 EPB41L4BQ9H329 900 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 A0A087X1B8 175 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 RGS14O43566 566 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 ANXA6P08133 673 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 PIK3CGP48736 1102 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 TCEAL5Q5H9L2 206 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 PCNX4Q63HM2 1172 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 ILDR2Q71H61 639 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 ZNF655Q8N720 491 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 ATP8B4Q8TF62 1192 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 PROX1Q92786 737 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 CNGB3Q9NQW8 809 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 CAMSAP1Q5T5Y3 1602 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 CES2O00748 559 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 PGAM1P18669 254 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 IL12RB1P42701 662 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 CDH17Q12864 832 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 ALG11Q2TAA5 492 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 LPCAT2Q7L5N7 544 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 IZUMO1Q8IYV9 350 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 MCOLN3Q8TDD5 553 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 ANKRD27Q96NW4 1050 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 CATSPER2Q96P56 530 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 C6orf62Q9GZU0 229 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 TCF7L2Q9NQB0 619 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 UXTQ9UBK9 157 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 UBA2Q9UBT2 640 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 COQ6Q9Y2Z9 468 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 TSPAN19P0C672 248 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms