RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 KIAA1671Q9BY89 1806 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 BRCA2P51587 3418 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 SLC38A8A6NNN8 435 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 H7C0C1 242 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 ABLIM3O94929 683 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 RBP3P10745 1247 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 ATP5OP48047 213 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 KPNA1P52294 538 aaPredicted RBP18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 PITX1P78337 314 aaPredicted RBP18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 PLD1Q13393 1074 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 TAF12Q16514 161 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 DARS2Q6PI48 645 aaKnown RBP18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 RHBDF2Q6PJF5 856 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 C4orf22Q6V702 233 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 PCGF5Q86SE9 256 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 HAPLN3Q96S86 360 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 CLSTN3Q9BQT9 956 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 TTLL2Q9BWV7 592 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 OSBPL2Q9H1P3 480 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 MTMR10Q9NXD2 777 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 GMIPQ9P107 970 aa18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 BCCIPQ9P287 314 aaKnown RBP eCLIP18.82■□□□□ 0.6
CCDC88C-203ENST00000389856 PTPRSQ13332 1948 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 RIPK2O43353 540 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 FGF18O76093 207 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 FAM107AO95990 144 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 CSH1P0DML2 217 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 CSH2P0DML3 217 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 HPDP32754 393 aaPredicted RBP18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 CCT5P48643 541 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 GPR15P49685 360 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 CORO7P57737 925 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 TPI1P60174 286 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 GUCY1A3Q02108 690 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 SDHAF4Q5VUM1 108 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 FOXR1Q6PIV2 292 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 C1orf228Q6PIY5 440 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 RELL1Q8IUW5 271 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 HERC6Q8IVU3 1022 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 TNS4Q8IZW8 715 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 PQLC3Q8N755 202 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 CLP1Q92989 425 aaKnown RBP18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 FAM118BQ9BPY3 351 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 TKTL2Q9H0I9 626 aa18.81■□□□□ 0.6
CCDC88C-203ENST00000389856 HACD1B0YJ81 288 aa18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 SMAPO00193 183 aa18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 RGS16O15492 202 aaPredicted RBP18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 GOT1P17174 413 aa18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 RPL17P18621 184 aaKnown RBP18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 ATP5DP30049 168 aa18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 PPP3CCP48454 512 aa18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 MAGOHP61326 146 aaKnown RBP18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 TAF10Q12962 218 aa18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 SLC29A2Q14542 456 aa18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 RFX8Q6ZV50 586 aa18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 NLRP14Q86W24 1093 aa18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 UBE2OQ9C0C9 1292 aaKnown RBP18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 CYP4F11Q9HBI6 524 aa18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 ARHGEF38Q9NXL2 777 aa18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 ANAPC5Q9UJX4 755 aa18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 TLR6Q9Y2C9 796 aa18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 NEU2Q9Y3R4 380 aa18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 HEY1Q9Y5J3 304 aa18.8■□□□□ 0.6
CCDC88C-203ENST00000389856 MYO1CO00159 1063 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 PRRG1O14668 218 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 CREB3O43889 395 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 VNN2O95498 520 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 APOEP02649 317 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 PECAM1P16284 738 aaPredicted RBP18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 ATP2A2P16615 1042 aaKnown RBP18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 IVDP26440 423 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 KLRC2P26717 231 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 SERPINB6P35237 376 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 ZNF276Q8N554 614 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 TTC9BQ8N6N2 239 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 STKLD1Q8NE28 680 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 SP7Q8TDD2 431 aaPredicted RBP18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 TMEM121Q9BTD3 319 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 SEMA4AQ9H3S1 761 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 NMUR1Q9HB89 426 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 RXFP1Q9HBX9 757 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 ARHGEF4Q9NR80 690 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 UXTQ9UBK9 157 aaPredicted RBP18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 LZTS1Q9Y250 596 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 GREB1Q4ZG55 1949 aa18.79■□□□□ 0.6
CCDC88C-203ENST00000389856 BCLAF3A2AJT9 711 aaKnown RBP18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 GMNCA6NCL1 334 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 NCAM2O15394 837 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 ADAM12O43184 909 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 TLL1O43897 1013 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 TCEA3O75764 348 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 STK10O94804 968 aaKnown RBP18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 IFNB1P01574 187 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 CTSAP10619 480 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 USP46P62068 366 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 TNFAIP8L3Q5GJ75 292 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 TAOK1Q7L7X3 1001 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 YTHDF3Q7Z739 585 aaKnown RBP18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 ITIH5Q86UX2 942 aa18.78■□□□□ 0.6
CCDC88C-203ENST00000389856 SERPINB12Q96P63 405 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms