RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 CREB3O43889 395 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 GSRP00390 522 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 SNRPAP09012 282 aaKnown RBP13.8□□□□□ -0.2
CCDC3-202ENST00000378839 MLH1P40692 756 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 CCNFP41002 786 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 PNPLA4P41247 253 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 SEPT7Q16181 437 aaKnown RBP13.8□□□□□ -0.2
CCDC3-202ENST00000378839 EFHC1Q5JVL4 640 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 ATG14Q6ZNE5 492 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 BHLHA9Q7RTU4 235 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 COLGALT1Q8NBJ5 622 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 GSDMBQ8TAX9 411 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 MIPEPQ99797 713 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 PSAT1Q9Y617 370 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 A0A0A0MRY4 1105 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 FAM237BA0A1B0GVD1 139 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 RNF103O00237 685 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 CLCNKBP51801 687 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 AP1B1Q10567 949 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 CES3Q6UWW8 571 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 TTC7BQ86TV6 843 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 ARMC2Q8NEN0 867 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 SPATA13Q96N96 652 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 WDR6Q9NNW5 1121 aaKnown RBP13.79□□□□□ -0.2
CCDC3-202ENST00000378839 KRT82Q9NSB4 513 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 COPEO14579 308 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 CLGNO14967 610 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 PSMB4P28070 264 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 TKTL1P51854 596 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 SNX16P57768 344 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 ZNF567Q8N184 647 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 TNIP3Q96KP6 325 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 GAD1Q99259 594 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 ULBP1Q9BZM6 244 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 PRDM12Q9H4Q4 367 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 ARL8BQ9NVJ2 186 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 DDX43Q9NXZ2 648 aaKnown RBP13.79□□□□□ -0.2
CCDC3-202ENST00000378839 HEY2Q9UBP5 337 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 DCLK1O15075 740 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 ZFXP17010 805 aaPredicted RBP13.79□□□□□ -0.2
CCDC3-202ENST00000378839 MGAT1P26572 445 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 NAA25Q14CX7 972 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 SETDB1Q15047 1291 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 NPWQ8N729 165 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 KCTD13Q8WZ19 329 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 PCED1BQ96HM7 432 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 TMEM120AQ9BXJ8 343 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 FRMD8Q9BZ67 464 aaPredicted RBP13.79□□□□□ -0.2
CCDC3-202ENST00000378839 PCMTD2Q9NV79 361 aa13.79□□□□□ -0.2
CCDC3-202ENST00000378839 NKX1-2Q9UD57 310 aaPredicted RBP13.79□□□□□ -0.2
CCDC3-202ENST00000378839 CCDC195A0A1B0GUA6 201 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 I3L4J1 428 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 KCNK1O00180 336 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 DCTN3O75935 186 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 EPHB2P29323 1055 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 SERPINB3P29508 390 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 NOS2P35228 1153 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 SESN2P58004 480 aaPredicted RBP13.78□□□□□ -0.2
CCDC3-202ENST00000378839 FSCN1Q16658 493 aaKnown RBP13.78□□□□□ -0.2
CCDC3-202ENST00000378839 STEAP4Q687X5 459 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 DEPDC1BQ8WUY9 529 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 LRRC39Q96DD0 335 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 SENP8Q96LD8 212 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 TBC1D10AQ9BXI6 508 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 TSPYL2Q9H2G4 693 aaPredicted RBP13.78□□□□□ -0.2
CCDC3-202ENST00000378839 SEPT10Q9P0V9 454 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 ZFP69BQ9UJL9 534 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 TRPM7Q96QT4 1865 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 HHLA1C9JL84 531 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 CHRNA1P02708 482 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 PRKCGP05129 697 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 USP17L7P0C7H9 530 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 NIPAL4Q0D2K0 466 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 TEX44Q53QW1 395 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 NAIF1Q69YI7 327 aaPredicted RBP13.78□□□□□ -0.2
CCDC3-202ENST00000378839 RFX8Q6ZV50 586 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 SKA1Q96BD8 255 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 RTP3Q9BQQ7 232 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 TXLNGQ9NUQ3 528 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 EMCNQ9ULC0 261 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 ST3GAL5Q9UNP4 418 aa13.78□□□□□ -0.2
CCDC3-202ENST00000378839 ALDH1A2O94788 518 aa13.77□□□□□ -0.2
CCDC3-202ENST00000378839 ALDOAP04075 364 aaKnown RBP13.77□□□□□ -0.2
CCDC3-202ENST00000378839 CTSHP09668 335 aa13.77□□□□□ -0.2
CCDC3-202ENST00000378839 ARL4AP40617 200 aa13.77□□□□□ -0.2
CCDC3-202ENST00000378839 CPT1AP50416 773 aa13.77□□□□□ -0.2
CCDC3-202ENST00000378839 BST1Q10588 318 aa13.77□□□□□ -0.2
CCDC3-202ENST00000378839 SEMA3BQ13214 749 aa13.77□□□□□ -0.2
CCDC3-202ENST00000378839 C2orf69Q8N8R5 385 aa13.77□□□□□ -0.2
CCDC3-202ENST00000378839 SLC7A14Q8TBB6 771 aa13.77□□□□□ -0.2
CCDC3-202ENST00000378839 PTCD3Q96EY7 689 aaKnown RBP13.77□□□□□ -0.2
CCDC3-202ENST00000378839 FCRL3Q96P31 734 aaPredicted RBP13.77□□□□□ -0.2
CCDC3-202ENST00000378839 MED10Q9BTT4 135 aa13.77□□□□□ -0.2
CCDC3-202ENST00000378839 SYBUQ9NX95 663 aa13.77□□□□□ -0.2
CCDC3-202ENST00000378839 DONSONQ9NYP3 566 aa13.77□□□□□ -0.2
CCDC3-202ENST00000378839 CDY2AQ9Y6F7 541 aa13.77□□□□□ -0.2
CCDC3-202ENST00000378839 KRT37O76014 449 aa13.77□□□□□ -0.21
CCDC3-202ENST00000378839 GLUD2P49448 558 aa13.77□□□□□ -0.21
CCDC3-202ENST00000378839 FKBP1BP68106 108 aa13.77□□□□□ -0.21
CCDC3-202ENST00000378839 BSPRYQ5W0U4 402 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms