RNA–Protein interactions for RNA: ENST00000374199.8

PRPF4-202, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PRPF4, Length 3,212 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-202ENST00000374199 SLC5A3P53794 718 aa12.98□□□□□ -0.33
PRPF4-202ENST00000374199 SMARCB1Q12824 385 aa12.98□□□□□ -0.33
PRPF4-202ENST00000374199 PAXIP1Q6ZW49 1069 aaPredicted RBP12.98□□□□□ -0.33
PRPF4-202ENST00000374199 SPATS2Q86XZ4 545 aaKnown RBP12.98□□□□□ -0.33
PRPF4-202ENST00000374199 FBXO36Q8NEA4 188 aa12.98□□□□□ -0.33
PRPF4-202ENST00000374199 C1orf74Q96LT6 269 aa12.98□□□□□ -0.33
PRPF4-202ENST00000374199 ABCC13Q9NSE7 274 aa12.98□□□□□ -0.33
PRPF4-202ENST00000374199 OR6C75A6NL08 312 aa12.98□□□□□ -0.33
PRPF4-202ENST00000374199 KBTBD13C9JR72 458 aa12.98□□□□□ -0.33
PRPF4-202ENST00000374199 HPDP32754 393 aaPredicted RBP12.98□□□□□ -0.33
PRPF4-202ENST00000374199 RABGGTBP53611 331 aa12.98□□□□□ -0.33
PRPF4-202ENST00000374199 TSPY1Q01534 308 aa12.98□□□□□ -0.33
PRPF4-202ENST00000374199 PDK1Q15118 436 aa12.98□□□□□ -0.33
PRPF4-202ENST00000374199 PPP6R3Q5H9R7 873 aaPredicted RBP12.98□□□□□ -0.33
PRPF4-202ENST00000374199 PDIK1LQ8N165 341 aa12.98□□□□□ -0.33
PRPF4-202ENST00000374199 NPWQ8N729 165 aa12.98□□□□□ -0.33
PRPF4-202ENST00000374199 ZNF473Q8WTR7 871 aaKnown RBP12.98□□□□□ -0.33
PRPF4-202ENST00000374199 C2orf15Q8WU43 125 aaKnown RBP12.98□□□□□ -0.33
PRPF4-202ENST00000374199 CCDC77Q9BR77 488 aa12.98□□□□□ -0.33
PRPF4-202ENST00000374199 RC3H2Q9HBD1 1191 aaKnown RBP12.98□□□□□ -0.33
PRPF4-202ENST00000374199 DNAJC17Q9NVM6 304 aaKnown RBP12.98□□□□□ -0.33
PRPF4-202ENST00000374199 MKS1Q9NXB0 559 aa12.98□□□□□ -0.33
PRPF4-202ENST00000374199 H7C0C1 242 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 BANF1O75531 89 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 ATP5OP48047 213 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 PGFP49763 221 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 KLHL38Q2WGJ6 581 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 DNAJC21Q5F1R6 531 aaKnown RBP12.97□□□□□ -0.33
PRPF4-202ENST00000374199 SLC7A14Q8TBB6 771 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 SLC44A1Q8WWI5 657 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 PSMC3IPQ9P2W1 217 aaPredicted RBP12.97□□□□□ -0.33
PRPF4-202ENST00000374199 TET1Q8NFU7 2136 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 TRIM66O15016 1216 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 CREB1P16220 341 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 YWHAGP61981 247 aaKnown RBP eCLIP12.97□□□□□ -0.33
PRPF4-202ENST00000374199 ANKRD20A2Q5SQ80 823 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 ANKRD20A1Q5TYW2 823 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 ANKRD20A3Q5VUR7 823 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 CNPY4Q8N129 248 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 MDM1Q8TC05 714 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 BCAS4Q8TDM0 211 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 UNC93B1Q9H1C4 597 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 MOCS1Q9NZB8 636 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 ADAM28Q9UKQ2 775 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 HEY1Q9Y5J3 304 aa12.97□□□□□ -0.33
PRPF4-202ENST00000374199 MYLKQ15746 1914 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 NCAM1P13591 858 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 PHBP35232 272 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 ARMC3Q5W041 872 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 LRRC8BQ6P9F7 803 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 DCP1BQ8IZD4 617 aaKnown RBP12.96□□□□□ -0.33
PRPF4-202ENST00000374199 CKAP2Q8WWK9 683 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 FAM149B1Q96BN6 582 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 P2RY11Q96G91 374 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 XAB2Q9HCS7 855 aaKnown RBP12.96□□□□□ -0.33
PRPF4-202ENST00000374199 OSER1Q9NX31 292 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 HSFX1Q9UBD0 423 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 TCRBV9S1A1TA0A576 114 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 EEF2KO00418 725 aaKnown RBP12.96□□□□□ -0.33
PRPF4-202ENST00000374199 SLCO1A2P46721 670 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 NFE2Q16621 373 aaPredicted RBP12.96□□□□□ -0.33
PRPF4-202ENST00000374199 PARP6Q2NL67 630 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 VARS2Q5ST30 1063 aaKnown RBP12.96□□□□□ -0.33
PRPF4-202ENST00000374199 SNX30Q5VWJ9 437 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 CTU1Q7Z7A3 348 aaKnown RBP12.96□□□□□ -0.33
PRPF4-202ENST00000374199 MCMBPQ9BTE3 642 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 RAB6BQ9NRW1 208 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 BPTFQ12830 3046 aa12.96□□□□□ -0.33
PRPF4-202ENST00000374199 IGLV3-10A0A075B6K4 115 aa12.96□□□□□ -0.34
PRPF4-202ENST00000374199 EXOC1LA0A1B0GW35 172 aa12.96□□□□□ -0.34
PRPF4-202ENST00000374199 FAM159BA6NKW6 160 aa12.96□□□□□ -0.34
PRPF4-202ENST00000374199 HOXA2O43364 376 aa12.96□□□□□ -0.34
PRPF4-202ENST00000374199 ASMTLO95671 621 aa12.96□□□□□ -0.34
PRPF4-202ENST00000374199 ERCC2P18074 760 aa12.96□□□□□ -0.34
PRPF4-202ENST00000374199 ELK3P41970 407 aa12.96□□□□□ -0.34
PRPF4-202ENST00000374199 IFNAR2P48551 515 aa12.96□□□□□ -0.34
PRPF4-202ENST00000374199 NPAS4Q8IUM7 802 aa12.96□□□□□ -0.34
PRPF4-202ENST00000374199 SCAMP5Q8TAC9 235 aa12.96□□□□□ -0.34
PRPF4-202ENST00000374199 CCDC110Q8TBZ0 833 aa12.96□□□□□ -0.34
PRPF4-202ENST00000374199 PYROXD1Q8WU10 500 aa12.96□□□□□ -0.34
PRPF4-202ENST00000374199 TTLL2Q9BWV7 592 aa12.96□□□□□ -0.34
PRPF4-202ENST00000374199 ZNF212Q9UDV6 495 aa12.96□□□□□ -0.34
PRPF4-202ENST00000374199 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.96□□□□□ -0.34
PRPF4-202ENST00000374199 TMEM120BA0PK00 339 aa12.95□□□□□ -0.34
PRPF4-202ENST00000374199 PPP1R12AO14974 1030 aaPredicted RBP12.95□□□□□ -0.34
PRPF4-202ENST00000374199 SLC18A2Q05940 514 aa12.95□□□□□ -0.34
PRPF4-202ENST00000374199 TTC19Q6DKK2 380 aaPredicted RBP12.95□□□□□ -0.34
PRPF4-202ENST00000374199 ARHGAP12Q8IWW6 846 aa12.95□□□□□ -0.34
PRPF4-202ENST00000374199 VPS52Q8N1B4 723 aa12.95□□□□□ -0.34
PRPF4-202ENST00000374199 UHMK1Q8TAS1 419 aaKnown RBP12.95□□□□□ -0.34
PRPF4-202ENST00000374199 ARNTL2Q8WYA1 636 aa12.95□□□□□ -0.34
PRPF4-202ENST00000374199 CHMP6Q96FZ7 201 aa12.95□□□□□ -0.34
PRPF4-202ENST00000374199 CLIC5Q9NZA1 410 aa12.95□□□□□ -0.34
PRPF4-202ENST00000374199 INPP5FQ9Y2H2 1132 aa12.95□□□□□ -0.34
PRPF4-202ENST00000374199 SSTR1P30872 391 aa12.95□□□□□ -0.34
PRPF4-202ENST00000374199 GARSP41250 739 aaKnown RBP12.95□□□□□ -0.34
PRPF4-202ENST00000374199 SEC24CP53992 1094 aa12.95□□□□□ -0.34
PRPF4-202ENST00000374199 BASP1P80723 227 aaKnown RBP12.95□□□□□ -0.34
PRPF4-202ENST00000374199 GPR17Q13304 367 aa12.95□□□□□ -0.34
PRPF4-202ENST00000374199 ARL13BQ3SXY8 428 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms