RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 RNF148Q8N7C7 305 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 ADAM32Q8TC27 787 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 KCTD15Q96SI1 283 aaPredicted RBP12.5□□□□□ -0.41
CLIP3-201ENST00000360535 PRMT7Q9NVM4 692 aaPredicted RBP12.5□□□□□ -0.41
CLIP3-201ENST00000360535 SNTG2Q9NY99 539 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 SOX13Q9UN79 622 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 PCDHA11Q9Y5I1 949 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.49□□□□□ -0.41
CLIP3-201ENST00000360535 MAGEA13PA6NCF6 341 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 ATP9BO43861 1147 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 ALDOAP04075 364 aaKnown RBP12.49□□□□□ -0.41
CLIP3-201ENST00000360535 PSMB4P28070 264 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 CRHR1P34998 444 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 PITX1P78337 314 aaPredicted RBP12.49□□□□□ -0.41
CLIP3-201ENST00000360535 DLG2Q15700 870 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 DNAL1Q4LDG9 190 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 FOXB2Q5VYV0 432 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 OR52E8Q6IFG1 317 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 ATG14Q6ZNE5 492 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 PID1Q7Z2X4 250 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 CDKL2Q92772 493 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 SMARCAD1Q9H4L7 1026 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 TXNRD2Q9NNW7 524 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 UBP1Q9NZI7 540 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 RPS6KL1Q9Y6S9 549 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 BCLAF3A2AJT9 711 aaKnown RBP12.49□□□□□ -0.41
CLIP3-201ENST00000360535 IRF6O14896 467 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 CFLARO15519 480 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 GABBR2O75899 941 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 SERPINA6P08185 405 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 VAV1P15498 845 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 L1CAMP32004 1257 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 KCTD2Q14681 263 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 TRMT5Q32P41 509 aaKnown RBP12.49□□□□□ -0.41
CLIP3-201ENST00000360535 RABGAP1LQ5R372 815 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 PHTF2Q8N3S3 785 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 DNAAF3Q8N9W5 541 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 RNF217Q8TC41 542 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 HTR3CQ8WXA8 447 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 ECSITQ9BQ95 431 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 MMADHCQ9H3L0 296 aaPredicted RBP12.49□□□□□ -0.41
CLIP3-201ENST00000360535 SYBUQ9NX95 663 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 DTLQ9NZJ0 730 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 TUBGCP4Q9UGJ1 667 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 ZNF112Q9UJU3 913 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 ZNF180Q9UJW8 692 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 POLR2AP24928 1970 aaKnown RBP12.49□□□□□ -0.41
CLIP3-201ENST00000360535 FAM159BA6NKW6 160 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 AIM2O14862 343 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 KLF11O14901 512 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 ADCY6O43306 1168 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 HBP1O60381 514 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 MAGEC1O60732 1142 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 SIN3BO75182 1162 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 TGFB3P10600 412 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 CD1EP15812 388 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 SERPINB5P36952 375 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 ARL4AP40617 200 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 COPAP53621 1224 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 ACTR3P61158 418 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 STILQ15468 1287 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 TRIP10Q15642 601 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 DCAF6Q58WW2 860 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 TEDDM1Q5T9Z0 273 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 PACS1Q6VY07 963 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 NET1Q7Z628 596 aaPredicted RBP12.49□□□□□ -0.41
CLIP3-201ENST00000360535 TFB1MQ8WVM0 346 aaKnown RBP12.49□□□□□ -0.41
CLIP3-201ENST00000360535 CSPG4P5Q96PW8 444 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 TBCBQ99426 244 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 PNPLA8Q9NP80 782 aa12.49□□□□□ -0.41
CLIP3-201ENST00000360535 RGPD3A6NKT7 1758 aaPredicted RBP12.48□□□□□ -0.41
CLIP3-201ENST00000360535 RGPD4Q7Z3J3 1758 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 LYNP07948 512 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 AKAP5P24588 427 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 LMO2P25791 158 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 RAP1GDS1P52306 607 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 CDC16Q13042 620 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 LBRQ14739 615 aaKnown RBP12.48□□□□□ -0.41
CLIP3-201ENST00000360535 EFHC1Q5JVL4 640 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 ZNF618Q5T7W0 954 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 AP1ARQ63HQ0 302 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 PDPK2PQ6A1A2 396 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 RIOX2Q8IUF8 465 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 KHSRPQ92945 711 aaKnown RBP eCLIP12.48□□□□□ -0.41
CLIP3-201ENST00000360535 CYP3A43Q9HB55 503 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 EMCNQ9ULC0 261 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 PLA2G4CQ9UP65 541 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 CSADQ9Y600 493 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 RLFQ13129 1914 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 PSME4Q14997 1843 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 A0A088AWK7 358 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 SDR42E2A6NKP2 422 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 RNF103O00237 685 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 MFSD11O43934 449 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 HSPA4LO95757 839 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 ITGA2BP08514 1039 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 TPH1P17752 444 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 SLC9A4Q6AI14 798 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 SPNS2Q8IVW8 549 aa12.48□□□□□ -0.41
CLIP3-201ENST00000360535 IGKV6-21A0A0C4DH24 114 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms