RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 ANHXE9PGG2 379 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 DPYSL4O14531 572 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 ZNF185O15231 689 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 DDX3YO15523 660 aaKnown RBP4.18□□□□□ -1.74
LIG4-201ENST00000356922 ATP1A1P05023 1023 aaKnown RBP4.18□□□□□ -1.74
LIG4-201ENST00000356922 SRGAP2BP0DMP2 458 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 MYBL1P10243 752 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 PYGMP11217 842 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 L1CAMP32004 1257 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 GJC1P36383 396 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 SCNN1AP37088 669 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 TUBP50607 506 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 ARSEP51690 589 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 HADHBP55084 474 aaKnown RBP4.18□□□□□ -1.74
LIG4-201ENST00000356922 TBX4P57082 545 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 ZNF211Q13398 564 aaPredicted RBP4.18□□□□□ -1.74
LIG4-201ENST00000356922 SMAD4Q13485 552 aaKnown RBP4.18□□□□□ -1.74
LIG4-201ENST00000356922 RAP1GAP2Q684P5 730 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 FBXL22Q6P050 247 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 BEND5Q7L4P6 421 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 SLC35F6Q8N357 371 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 FNIP1Q8TF40 1166 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 RNF139Q8WU17 664 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 SNRNP25Q9BV90 132 aaKnown RBP4.18□□□□□ -1.74
LIG4-201ENST00000356922 FAM204AQ9H8W3 233 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 POLR3BQ9NW08 1133 aaPredicted RBP4.18□□□□□ -1.74
LIG4-201ENST00000356922 COMMD8Q9NX08 183 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 ARHGEF38Q9NXL2 777 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 UVRAGQ9P2Y5 699 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 UXTQ9UBK9 157 aaPredicted RBP4.18□□□□□ -1.74
LIG4-201ENST00000356922 DPP7Q9UHL4 492 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 VANGL2Q9ULK5 521 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 ARHGAP26Q9UNA1 814 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 SSUH2Q9Y2M2 353 aa4.18□□□□□ -1.74
LIG4-201ENST00000356922 KIF26AQ9ULI4 1882 aaPredicted RBP4.17□□□□□ -1.74
LIG4-201ENST00000356922 A0A0A6YYK5 440 aaPredicted RBP4.17□□□□□ -1.74
LIG4-201ENST00000356922 KRT10P13645 584 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 GOT1P17174 413 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 PSEN1P49768 467 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 NRLP54845 237 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 MLLT6P55198 1093 aaPredicted RBP4.17□□□□□ -1.74
LIG4-201ENST00000356922 ZP2Q05996 745 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 SEMA3BQ13214 749 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 HTR4Q13639 388 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 C10orf76Q5T2E6 689 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 TXNDC11Q6PKC3 985 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 NAT16Q8N8M0 369 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 NIPA2Q8N8Q9 360 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 PDZD8Q8NEN9 1154 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 HSPH1Q92598 858 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 RNF25Q96BH1 459 aaPredicted RBP4.17□□□□□ -1.74
LIG4-201ENST00000356922 KCTD15Q96SI1 283 aaPredicted RBP4.17□□□□□ -1.74
LIG4-201ENST00000356922 FAM118BQ9BPY3 351 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 PHF7Q9BWX1 381 aaPredicted RBP4.17□□□□□ -1.74
LIG4-201ENST00000356922 C10orf88Q9H8K7 445 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 MRPL47Q9HD33 250 aaKnown RBP4.17□□□□□ -1.74
LIG4-201ENST00000356922 GDE1Q9NZC3 331 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 CWC15Q9P013 229 aaKnown RBP4.17□□□□□ -1.74
LIG4-201ENST00000356922 ZNF212Q9UDV6 495 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 HCN2Q9UL51 889 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 FZD10Q9ULW2 581 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 TRAV19A0A0A6YYK7 116 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 LOC730098B7Z3J9 87 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 ZNF197O14709 1029 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 LRIG2O94898 1065 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 RALAP11233 206 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 RDXP35241 583 aaKnown RBP4.17□□□□□ -1.74
LIG4-201ENST00000356922 SLC6A11P48066 632 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 SLC10A2Q12908 348 aaPredicted RBP4.17□□□□□ -1.74
LIG4-201ENST00000356922 AUHQ13825 339 aaKnown RBP4.17□□□□□ -1.74
LIG4-201ENST00000356922 EML3Q32P44 896 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 PPP6R3Q5H9R7 873 aaPredicted RBP4.17□□□□□ -1.74
LIG4-201ENST00000356922 ZNF569Q5MCW4 686 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 MFSD7Q6UXD7 560 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 ZNF662Q6ZS27 426 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 NYAP1Q6ZVC0 841 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 HTR3DQ70Z44 454 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 STRADAQ7RTN6 431 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 RHOT2Q8IXI1 618 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 COG1Q8WTW3 980 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 EZH1Q92800 747 aaPredicted RBP4.17□□□□□ -1.74
LIG4-201ENST00000356922 ZNF419Q96HQ0 510 aaPredicted RBP4.17□□□□□ -1.74
LIG4-201ENST00000356922 HES6Q96HZ4 224 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 MS4A14Q96JA4 679 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 RIPOR3Q96MK2 946 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 KLC2Q9H0B6 622 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 OR12D3Q9UGF7 316 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 SCINQ9Y6U3 715 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 TECTAO75443 2155 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 FREM2Q5SZK8 3169 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 WEE1P30291 646 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 CCR1P32246 355 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 MTHFRP42898 656 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 PPP3CCP48454 512 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 FCHO2Q0JRZ9 810 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 LY6G5CQ5SRR4 150 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 MEI1Q5TIA1 1274 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 MANEALQ5VSG8 457 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 TMEM215Q68D42 235 aa4.17□□□□□ -1.74
LIG4-201ENST00000356922 MFSD6LQ8IWD5 586 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms