RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 HALP42357 657 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 RXRGP48443 463 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 HSPA13P48723 471 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 NUMBP49757 651 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 TXNL4AP83876 142 aaKnown RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 TAP1Q03518 808 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 PDAP1Q13442 181 aaKnown RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 DOK7Q18PE1 504 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 MGAT5BQ3V5L5 792 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 KCTD21Q4G0X4 260 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 STXBP5Q5T5C0 1151 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 ZFP1Q6P2D0 407 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 EPGNQ6UW88 154 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 CARM1Q86X55 608 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 SNX32Q86XE0 403 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 DSELQ8IZU8 1212 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 ZNF781Q8N8C0 355 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 TMEM35BQ8NCS4 154 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 CMASQ8NFW8 434 aaPredicted RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 GSDMBQ8TAX9 411 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 CERKQ8TCT0 537 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 DQX1Q8TE96 717 aaKnown RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 USP13Q92995 863 aaPredicted RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 ZBTB45Q96K62 511 aaPredicted RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 PPP1R10Q96QC0 940 aaKnown RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 ACO2Q99798 780 aaKnown RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 HAUS8Q9BT25 410 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 GCOM2Q9BZD3 368 aaPredicted RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 SDCBP2Q9H190 292 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 RMI1Q9H9A7 625 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 HOMER2Q9NSB8 354 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 PRPF19Q9UMS4 504 aaKnown RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 AHDC1Q5TGY3 1603 aaPredicted RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 E2F8A0AVK6 867 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 FUOMA2VDF0 154 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 GPR25O00155 361 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 FBP2O00757 339 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 KCNN4O15554 427 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 DGKIO75912 1065 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 MAP3K6O95382 1288 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 H6PDO95479 791 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 AMHP03971 560 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 FUCA1P04066 466 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 KRT3P12035 628 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 P4HA1P13674 534 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 ZFXP17010 805 aaPredicted RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 GLDCP23378 1020 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 TBXAS1P24557 533 aaPredicted RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 PIK3R1P27986 724 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 MIPP30301 263 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 CDH5P33151 784 aaPredicted RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 GRIA1P42261 906 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 SLC5A3P53794 718 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 ABCE1P61221 599 aaKnown RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 CNTN2Q02246 1040 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 PDCD4Q53EL6 469 aaKnown RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 PPM1JQ5JR12 505 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 GRAMD4Q6IC98 578 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 DENND1BQ6P3S1 775 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 NAPRTQ6XQN6 538 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 BNC2Q6ZN30 1099 aaPredicted RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 CYP4V2Q6ZWL3 525 aaPredicted RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 FASTKD5Q7L8L6 764 aaKnown RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 LDHDQ86WU2 507 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 ADAM32Q8TC27 787 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 DEPDC1BQ8WUY9 529 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 COA1Q9GZY4 146 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 CAAP1Q9H8G2 361 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 FBXO28Q9NVF7 368 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 ZNF358Q9NW07 568 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 SELENONQ9NZV5 590 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 TMEM216Q9P0N5 145 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 IGSF9Q9P2J2 1179 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 MRPL11Q9Y3B7 192 aaKnown RBP6.98□□□□□ -1.29
VPS39-202ENST00000348544 UBIAD1Q9Y5Z9 338 aa6.98□□□□□ -1.29
VPS39-202ENST00000348544 TMEM247A6NEH6 219 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 H7C0C1 242 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 ACOT8O14734 319 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 WDR46O15213 610 aaKnown RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 GLRA3O75311 464 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 ATG7O95352 703 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 CST3P01034 146 aaPredicted RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 RBL1P28749 1068 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 MAGEA6P43360 314 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 ATP5OP48047 213 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 SERPINB9P50453 376 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 SMAD1Q15797 465 aaKnown RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 HADHQ16836 314 aaKnown RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 SEZ6Q53EL9 994 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 FSCBQ5H9T9 825 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 ZNF362Q5T0B9 420 aaPredicted RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 SH3PXD2AQ5TCZ1 1133 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 IL23RQ5VWK5 629 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 DCLRE1AQ6PJP8 1040 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 DCDC5Q6ZRR9 648 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 GPR180Q86V85 440 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 FIBCD1Q8N539 461 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 KYQ8NBH2 561 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 FAM156AQ8NDB6 213 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 C12orf43Q96C57 262 aaKnown RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms