RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 DEPDC1BQ8WUY9 529 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 NT5C3BQ969T7 300 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 PGLYRP2Q96PD5 576 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 LRMDAQ9H2I8 198 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 XAB2Q9HCS7 855 aaKnown RBP19.96■□□□□ 0.79
COL9A3-201ENST00000343916 ANLNQ9NQW6 1124 aa19.96■□□□□ 0.79
COL9A3-201ENST00000343916 CCDC195A0A1B0GUA6 201 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 FYNP06241 537 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 LRPAP1P30533 357 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 CACNA2D1P54289 1103 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 PURAQ00577 322 aaKnown RBP19.95■□□□□ 0.78
COL9A3-201ENST00000343916 DEUP1Q05D60 604 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 OLIG2Q13516 323 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 FSCN1Q16658 493 aaKnown RBP19.95■□□□□ 0.78
COL9A3-201ENST00000343916 LGSNQ5TDP6 509 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 SLC7A14Q8TBB6 771 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 PRR11Q96HE9 360 aaPredicted RBP19.95■□□□□ 0.78
COL9A3-201ENST00000343916 GAD1Q99259 594 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 TSPYL2Q9H2G4 693 aaPredicted RBP19.95■□□□□ 0.78
COL9A3-201ENST00000343916 PRDM12Q9H4Q4 367 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 FBXO6Q9NRD1 293 aaPredicted RBP19.95■□□□□ 0.78
COL9A3-201ENST00000343916 IL1RAPL1Q9NZN1 696 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 HEY2Q9UBP5 337 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 YJEFN3A6XGL0 299 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 E7ENQ6 273 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 I6L893 689 aaPredicted RBP19.95■□□□□ 0.78
COL9A3-201ENST00000343916 GABRDO14764 452 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 KRT38O76015 456 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 CTSHP09668 335 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 PSMB4P28070 264 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 MIEF2Q96C03 454 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 SENP8Q96LD8 212 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 ULBP1Q9BZM6 244 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 ZNF395Q9H8N7 513 aaPredicted RBP19.95■□□□□ 0.78
COL9A3-201ENST00000343916 STAP1Q9ULZ2 295 aa19.95■□□□□ 0.78
COL9A3-201ENST00000343916 MYBPHLA2RUH7 354 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 KCNK1O00180 336 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 TOMM70O94826 608 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 FAM200BP0CF97 657 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 CLCNKBP51801 687 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 CTC1Q2NKJ3 1217 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 CES4AQ5XG92 561 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 BNIPLQ7Z465 357 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 NDUFAF2Q8N183 169 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 C3orf58Q8NDZ4 430 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 WNT8BQ93098 351 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 TMEM120AQ9BXJ8 343 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 DNAI2Q9GZS0 605 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 MOCS1Q9NZB8 636 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 HACD1B0YJ81 288 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 H3BRJ5 948 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 EEF2KO00418 725 aaKnown RBP19.94■□□□□ 0.78
COL9A3-201ENST00000343916 CAPN9O14815 690 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 DLDP09622 509 aaKnown RBP19.94■□□□□ 0.78
COL9A3-201ENST00000343916 MGAT1P26572 445 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 SERPINB3P29508 390 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 ARFIP2P53365 341 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 ZNF398Q8TD17 642 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 NSMCE1Q8WV22 266 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 PCED1BQ96HM7 432 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 PAAF1Q9BRP4 392 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 RHOBTB2Q9BYZ6 727 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 MIOSQ9NXC5 875 aa19.94■□□□□ 0.78
COL9A3-201ENST00000343916 RCOR3Q9P2K3 495 aaPredicted RBP19.94■□□□□ 0.78
COL9A3-201ENST00000343916 ATP5HO75947 161 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 C6orf222P0C671 652 aaPredicted RBP19.93■□□□□ 0.78
COL9A3-201ENST00000343916 WASHC5Q12768 1159 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 TAF1CQ15572 869 aaPredicted RBP19.93■□□□□ 0.78
COL9A3-201ENST00000343916 RFX8Q6ZV50 586 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 ZNF567Q8N184 647 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 KCTD13Q8WZ19 329 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 CDY2AQ9Y6F7 541 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 FAM237BA0A1B0GVD1 139 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 AP1G2O75843 785 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 ANP32DO95626 131 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 GSTA2P09210 222 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 USP17L7P0C7H9 530 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 EPHB2P29323 1055 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 FDFT1P37268 417 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 IRX4P78413 519 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 SARNPP82979 210 aaKnown RBP19.93■□□□□ 0.78
COL9A3-201ENST00000343916 NAA25Q14CX7 972 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 BZW1Q7L1Q6 419 aaKnown RBP19.93■□□□□ 0.78
COL9A3-201ENST00000343916 ARNTL2Q8WYA1 636 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 SLC2A13Q96QE2 648 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 SMOQ99835 787 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 KATNAL1Q9BW62 490 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 TBC1D10AQ9BXI6 508 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 ST3GAL5Q9UNP4 418 aa19.93■□□□□ 0.78
COL9A3-201ENST00000343916 ZNF236Q9UL36 1845 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 CCNFP41002 786 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 TMPRSS15P98073 1019 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 DPYSQ14117 519 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 CES3Q6UWW8 571 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 ZMIZ2Q8NF64 920 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 RAB3IPQ96QF0 476 aaPredicted RBP19.92■□□□□ 0.78
COL9A3-201ENST00000343916 TSPAN18Q96SJ8 248 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 SYT15Q9BQS2 421 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 FAM105AQ9NUU6 356 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 CASTOR2A6NHX0 329 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms