RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 MRPS25P82663 173 aaKnown RBP10.44□□□□□ -0.74
USP54-201ENST00000339859 GRSF1Q12849 480 aaKnown RBP eCLIP10.44□□□□□ -0.74
USP54-201ENST00000339859 NNTQ13423 1086 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 LBRQ14739 615 aaKnown RBP10.44□□□□□ -0.74
USP54-201ENST00000339859 CCDC85BQ15834 202 aaPredicted RBP10.44□□□□□ -0.74
USP54-201ENST00000339859 ANKRD20A8PQ5CZ79 823 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 MTSS1LQ765P7 747 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 HNRNPABQ99729 332 aaKnown RBP10.44□□□□□ -0.74
USP54-201ENST00000339859 AKAP7Q9P0M2 348 aaPredicted RBP10.44□□□□□ -0.74
USP54-201ENST00000339859 RAD54BQ9Y620 910 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 MAGEB16A2A368 324 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 SUPT3HB4E1H0 165 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 SUPT3HO75486 399 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 TTC4O95801 387 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 CYP1A2P05177 515 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 CSF2RAP15509 400 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 SLC10A6Q3KNW5 377 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 TMTC4Q5T4D3 741 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 C12orf29Q8N999 325 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 MCRS1Q96EZ8 462 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.43□□□□□ -0.74
USP54-201ENST00000339859 CPSF2Q9P2I0 782 aaKnown RBP10.43□□□□□ -0.74
USP54-201ENST00000339859 LRP5O75197 1615 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 SDR42E2A6NKP2 422 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 USP27XA6NNY8 438 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 VPS26AO75436 327 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 SERPIND1P05546 499 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 PRKCIP41743 596 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 GAD2Q05329 585 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 SMAD1Q15797 465 aaKnown RBP10.43□□□□□ -0.74
USP54-201ENST00000339859 CCNYL1Q8N7R7 359 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 TBL1YQ9BQ87 522 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 TRIM51Q9BSJ1 452 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 GANQ9H2C0 597 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 ATP13A3Q9H7F0 1226 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 WRAP73Q9P2S5 460 aaPredicted RBP10.43□□□□□ -0.74
USP54-201ENST00000339859 DEC1Q9P2X7 70 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 PAPPA2Q9BXP8 1791 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.43□□□□□ -0.74
USP54-201ENST00000339859 OPLAHO14841 1288 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 HMOX2P30519 316 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 MAMLD1Q13495 774 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 COL9A3Q14050 684 aaPredicted RBP10.43□□□□□ -0.74
USP54-201ENST00000339859 NPY5RQ15761 445 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 MIIPQ5JXC2 388 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 ZBTB41Q5SVQ8 909 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 PPFIBP2Q8ND30 876 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 BTN2A3PQ96KV6 586 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 SENP1Q9P0U3 644 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 TIAM2Q8IVF5 1701 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 WDR91A4D1P6 747 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 KIF3CO14782 793 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 PBLDP30039 288 aaPredicted RBP10.43□□□□□ -0.74
USP54-201ENST00000339859 ITGA8P53708 1063 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 CCNG2Q16589 344 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 MFSD5Q6N075 450 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 WDR59Q6PJI9 974 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 HTR3CQ8WXA8 447 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 ABCB6Q9NP58 842 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 CHMP2BQ9UQN3 213 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 MYADML2A6NDP7 307 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 GLP2RO95838 553 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 NRIP1P48552 1158 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 OCRLQ01968 901 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 PLCL1Q15111 1095 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 WDR75Q8IWA0 830 aaKnown RBP10.43□□□□□ -0.74
USP54-201ENST00000339859 PHACTR4Q8IZ21 702 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 OSCP1Q8WVF1 389 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 TUBB6Q9BUF5 446 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 FAM153AQ9UHL3 310 aa10.43□□□□□ -0.74
USP54-201ENST00000339859 VIRMAQ69YN4 1812 aaKnown RBP10.42□□□□□ -0.74
USP54-201ENST00000339859 FRMD3A2A2Y4 597 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 INPPL1O15357 1258 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 SOD2P04179 222 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 CORO1AP31146 461 aaKnown RBP10.42□□□□□ -0.74
USP54-201ENST00000339859 HTR7P34969 479 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 CARSP49589 748 aaKnown RBP10.42□□□□□ -0.74
USP54-201ENST00000339859 SETMARQ53H47 684 aaPredicted RBP10.42□□□□□ -0.74
USP54-201ENST00000339859 ING5Q8WYH8 240 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 TIFAQ96CG3 184 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 NKX2-4Q9H2Z4 354 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 OSGEPQ9NPF4 335 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 MAN1C1Q9NR34 630 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 UTP6Q9NYH9 597 aaKnown RBP10.42□□□□□ -0.74
USP54-201ENST00000339859 FBXO10Q9UK96 956 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 MYH7P12883 1935 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 DDX3XO00571 662 aaKnown RBP eCLIP10.42□□□□□ -0.74
USP54-201ENST00000339859 KCNE1P15382 129 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 PTPN3P26045 913 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 CST5P28325 142 aaPredicted RBP10.42□□□□□ -0.74
USP54-201ENST00000339859 CHPFQ8IZ52 775 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 NAT9Q9BTE0 207 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 TRIM33Q9UPN9 1127 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 PER2O15055 1255 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 THOP1P52888 689 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 MYO1HQ8N1T3 1032 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 KAT5Q92993 513 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 PDLIM2Q96JY6 352 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 KDM4CQ9H3R0 1056 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 RRAGDQ9NQL2 400 aaPredicted RBP10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms