RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CCAR2Q8N163 923 aaKnown RBP22.97■■□□□ 1.27
SDC3-202ENST00000339394 KIAA1524Q8TCG1 905 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 OTUB2Q96DC9 234 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 MAGEB5Q9BZ81 275 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 SIK2Q9H0K1 926 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 FZD10Q9ULW2 581 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 NUP210Q8TEM1 1887 aaPredicted RBP22.97■■□□□ 1.27
SDC3-202ENST00000339394 SPOPO43791 374 aa22.96■■□□□ 1.27
SDC3-202ENST00000339394 CHKAP35790 457 aa22.96■■□□□ 1.27
SDC3-202ENST00000339394 IFNAR2P48551 515 aa22.96■■□□□ 1.27
SDC3-202ENST00000339394 MLLT6P55198 1093 aaPredicted RBP22.96■■□□□ 1.27
SDC3-202ENST00000339394 TAS2R40P59535 323 aa22.96■■□□□ 1.27
SDC3-202ENST00000339394 HADHQ16836 314 aaKnown RBP22.96■■□□□ 1.27
SDC3-202ENST00000339394 BOLA3Q53S33 107 aa22.96■■□□□ 1.27
SDC3-202ENST00000339394 KCNT1Q5JUK3 1230 aa22.96■■□□□ 1.27
SDC3-202ENST00000339394 FAM217AQ8IXS0 508 aa22.96■■□□□ 1.27
SDC3-202ENST00000339394 C1orf74Q96LT6 269 aa22.96■■□□□ 1.27
SDC3-202ENST00000339394 IRX2Q9BZI1 471 aaPredicted RBP22.96■■□□□ 1.27
SDC3-202ENST00000339394 EBF3Q9H4W6 596 aa22.96■■□□□ 1.27
SDC3-202ENST00000339394 ZWILCHQ9H900 591 aa22.96■■□□□ 1.27
SDC3-202ENST00000339394 SLC6A4P31645 630 aa22.95■■□□□ 1.26
SDC3-202ENST00000339394 GGCXP38435 758 aa22.95■■□□□ 1.26
SDC3-202ENST00000339394 VCPP55072 806 aaKnown RBP22.95■■□□□ 1.26
SDC3-202ENST00000339394 TNK2Q07912 1038 aa22.95■■□□□ 1.26
SDC3-202ENST00000339394 PDGFRLQ15198 375 aa22.95■■□□□ 1.26
SDC3-202ENST00000339394 SMTNL2Q2TAL5 461 aa22.95■■□□□ 1.26
SDC3-202ENST00000339394 RAP1GAP2Q684P5 730 aa22.95■■□□□ 1.26
SDC3-202ENST00000339394 RFWD3Q6PCD5 774 aa22.95■■□□□ 1.26
SDC3-202ENST00000339394 PRMT1Q99873 361 aaKnown RBP22.95■■□□□ 1.26
SDC3-202ENST00000339394 SNRNP25Q9BV90 132 aaKnown RBP22.95■■□□□ 1.26
SDC3-202ENST00000339394 BRD9Q9H8M2 597 aa22.95■■□□□ 1.26
SDC3-202ENST00000339394 SNX10Q9Y5X0 201 aa22.95■■□□□ 1.26
SDC3-202ENST00000339394 MUC3AQ02505 3323 aa22.95■■□□□ 1.26
SDC3-202ENST00000339394 ARNTLO00327 626 aa22.94■■□□□ 1.26
SDC3-202ENST00000339394 TRDMT1O14717 391 aaKnown RBP22.94■■□□□ 1.26
SDC3-202ENST00000339394 ARSAP15289 507 aa22.94■■□□□ 1.26
SDC3-202ENST00000339394 TDGQ13569 410 aa22.94■■□□□ 1.26
SDC3-202ENST00000339394 AUHQ13825 339 aaKnown RBP22.94■■□□□ 1.26
SDC3-202ENST00000339394 EFHC2Q5JST6 749 aa22.94■■□□□ 1.26
SDC3-202ENST00000339394 TJAP1Q5JTD0 557 aa22.94■■□□□ 1.26
SDC3-202ENST00000339394 SYCE1Q8N0S2 351 aa22.94■■□□□ 1.26
SDC3-202ENST00000339394 CPXM2Q8N436 756 aa22.94■■□□□ 1.26
SDC3-202ENST00000339394 DDX50Q9BQ39 737 aaKnown RBP22.94■■□□□ 1.26
SDC3-202ENST00000339394 OSBPL2Q9H1P3 480 aa22.94■■□□□ 1.26
SDC3-202ENST00000339394 HPS4Q9NQG7 708 aa22.94■■□□□ 1.26
SDC3-202ENST00000339394 GPATCH2LQ9NWQ4 482 aa22.94■■□□□ 1.26
SDC3-202ENST00000339394 OR12D3Q9UGF7 316 aa22.94■■□□□ 1.26
SDC3-202ENST00000339394 AP4E1Q9UPM8 1137 aa22.94■■□□□ 1.26
SDC3-202ENST00000339394 GFRA2O00451 464 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 RARAP10276 462 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 TACR2P21452 398 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 CA9Q16790 459 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 ATP13A4Q4VNC1 1196 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 ACBD5Q5T8D3 534 aaPredicted RBP22.93■■□□□ 1.26
SDC3-202ENST00000339394 RHBDF2Q6PJF5 856 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 TPGS1Q6ZTW0 290 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 CHSY1Q86X52 802 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 TMEM25Q86YD3 366 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 PSTKQ8IV42 348 aaKnown RBP22.93■■□□□ 1.26
SDC3-202ENST00000339394 GJD3Q8N144 294 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 PYROXD2Q8N2H3 581 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 IRF7Q92985 503 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 ATP2A3Q93084 1043 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 OTOL1A6NHN0 477 aaPredicted RBP22.93■■□□□ 1.26
SDC3-202ENST00000339394 FAM72CH0Y354 149 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 TNNT1P13805 278 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 LY6G5CQ5SRR4 150 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 FAM72AQ5TYM5 149 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 FAM72DQ6L9T8 149 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 FBXL22Q6P050 247 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 POLNQ7Z5Q5 900 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 C14orf80Q86SX3 495 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 FAM72BQ86X60 149 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 TEKT4Q8WW24 435 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 HSPH1Q92598 858 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 MYEOVQ96EZ4 313 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 DHX35Q9H5Z1 703 aaKnown RBP22.93■■□□□ 1.26
SDC3-202ENST00000339394 CD320Q9NPF0 282 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 SPHK2Q9NRA0 654 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 KCND1Q9NSA2 647 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 GTSE1Q9NYZ3 720 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 VANGL2Q9ULK5 521 aa22.93■■□□□ 1.26
SDC3-202ENST00000339394 HELZP42694 1942 aaKnown RBP22.92■■□□□ 1.26
SDC3-202ENST00000339394 GOLGA6L9A6NEM1 432 aa22.92■■□□□ 1.26
SDC3-202ENST00000339394 NARSO43776 548 aaKnown RBP22.92■■□□□ 1.26
SDC3-202ENST00000339394 TSPAN3O60637 253 aa22.92■■□□□ 1.26
SDC3-202ENST00000339394 NFATC1O95644 943 aa22.92■■□□□ 1.26
SDC3-202ENST00000339394 KRT7P08729 469 aa22.92■■□□□ 1.26
SDC3-202ENST00000339394 GJC1P36383 396 aa22.92■■□□□ 1.26
SDC3-202ENST00000339394 RUNX3Q13761 415 aa22.92■■□□□ 1.26
SDC3-202ENST00000339394 DHCR24Q15392 516 aa22.92■■□□□ 1.26
SDC3-202ENST00000339394 LRRC38Q5VT99 294 aa22.92■■□□□ 1.26
SDC3-202ENST00000339394 NT5DC3Q86UY8 548 aa22.92■■□□□ 1.26
SDC3-202ENST00000339394 RNF135Q8IUD6 432 aa22.92■■□□□ 1.26
SDC3-202ENST00000339394 RHOT1Q8IXI2 618 aa22.92■■□□□ 1.26
SDC3-202ENST00000339394 C17orf53Q8N3J3 647 aaPredicted RBP22.92■■□□□ 1.26
SDC3-202ENST00000339394 CD101Q93033 1021 aa22.92■■□□□ 1.26
SDC3-202ENST00000339394 P2RY11Q96G91 374 aa22.92■■□□□ 1.26
SDC3-202ENST00000339394 ECT2Q9H8V3 914 aa22.92■■□□□ 1.26
SDC3-202ENST00000339394 STAU2Q9NUL3 570 aaKnown RBP eCLIP22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms