RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 AGO4Q9HCK5 861 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 EPS15L1Q9UBC2 864 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 WDR37Q9Y2I8 494 aa13.84□□□□□ -0.19
CCDC88C-201ENST00000331194 APOC4-APOC2K7ER74 178 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 BIRC5O15392 142 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 APOC2P02655 101 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 CALB1P05937 261 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 MIPP30301 263 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 RPL26P61254 145 aaKnown RBP13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 GSTM4Q03013 218 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 PTPN20Q4JDL3 420 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 OGFOD2Q6N063 350 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 DENND1BQ6P3S1 775 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 LDHDQ86WU2 507 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 HACE1Q8IYU2 909 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 TMEM216Q9P0N5 145 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 SUN2Q9UH99 717 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 RAD17O75943 681 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 PRKCGP05129 697 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 MYCLP12524 364 aaPredicted RBP13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 PSMC3P17980 439 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 EIF2AK2P19525 551 aaKnown RBP13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 CCR10P46092 362 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 LIG4P49917 911 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 SNRPFP62306 86 aaKnown RBP13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 GRAMD4Q6IC98 578 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 ARCQ7LC44 396 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 DSELQ8IZU8 1212 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 DDI1Q8WTU0 396 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 NLRP7Q8WX94 980 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 ATXN7L3BQ96GX2 97 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 CEP170P1Q96L14 293 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 PEBP4Q96S96 227 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 PNPLA8Q9NP80 782 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 GPATCH2LQ9NWQ4 482 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 PLK2Q9NYY3 685 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 STK39Q9UEW8 545 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 PSAT1Q9Y617 370 aa13.83□□□□□ -0.2
CCDC88C-201ENST00000331194 NPR1P16066 1061 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 TSHRP16473 764 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 HOXA10P31260 410 aaPredicted RBP13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 OXCT1P55809 520 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 TGFBIQ15582 683 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 UBR7Q8N806 425 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 RANBP9Q96S59 729 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 PAIP1Q9H074 479 aaKnown RBP13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 COQ10BQ9H8M1 238 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 PLIN3O60664 434 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 PORP16435 677 aaPredicted RBP13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 GABRB2P47870 512 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 CDK9P50750 372 aaKnown RBP13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 MCCD1P59942 119 aaPredicted RBP13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 PHEXP78562 749 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 RELAQ04206 551 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 CDK18Q07002 472 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 MTMR1Q13613 665 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 IL23RQ5VWK5 629 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 TMEM198Q66K66 360 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 XKR5Q6UX68 686 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 PACS1Q6VY07 963 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 NAPRTQ6XQN6 538 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 CLVS1Q8IUQ0 354 aaPredicted RBP13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 SP8Q8IXZ3 490 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 SLC15A3Q8IY34 581 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 LRRC43Q8N309 656 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 TMEM35BQ8NCS4 154 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 ATP6V1E2Q96A05 226 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 SLC2A11Q9BYW1 496 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 RBAKQ9NYW8 714 aaPredicted RBP13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 CDC14AQ9UNH5 594 aa13.82□□□□□ -0.2
CCDC88C-201ENST00000331194 CDH6P55285 790 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 PFKPQ01813 784 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 CDO1Q16878 200 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 ZNF423Q2M1K9 1284 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 SLC9A4Q6AI14 798 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 EME1Q96AY2 570 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 RCN3Q96D15 328 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 MASTLQ96GX5 879 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 ABHD8Q96I13 439 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 SLC29A1Q99808 456 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 OSBPL6Q9BZF3 934 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 ZNF277Q9NRM2 450 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 AGO2Q9UKV8 859 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 KANSL1LA0AUZ9 987 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 EXTL3O43909 919 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 ADAM23O75077 832 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 SERPINB7O75635 380 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 ABCG1P45844 678 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 PGGT1BP53609 377 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 PSMC1P62191 440 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 BORAQ6PGQ7 559 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 CPXCR1Q8N123 301 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 BRD8Q9H0E9 1235 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 TCEAL9Q9UHQ7 104 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 SPAG6O75602 509 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 METTL18O95568 372 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 SERPINE1P05121 402 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 KRT7P08729 469 aa13.81□□□□□ -0.2
CCDC88C-201ENST00000331194 RALBP11234 206 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms