RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 IDH3AP50213 366 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 RHDQ02161 417 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 TRIM25Q14258 630 aaKnown RBP4.91□□□□□ -1.62
PTPN13-201ENST00000316707 C16orf72Q14CZ0 275 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 ZNF667Q5HYK9 610 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 C16orf46Q6P387 395 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 SNX32Q86XE0 403 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 ANKRD13AQ8IZ07 590 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 UNC5BQ8IZJ1 945 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 SNRNP27Q8WVK2 155 aaKnown RBP4.91□□□□□ -1.62
PTPN13-201ENST00000316707 ASB9Q96DX5 294 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 CNDP2Q96KP4 475 aaKnown RBP4.91□□□□□ -1.62
PTPN13-201ENST00000316707 ZNF597Q96LX8 424 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 LENG8Q96PV6 779 aaPredicted RBP4.91□□□□□ -1.62
PTPN13-201ENST00000316707 KIAA1551Q9HCM1 1747 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 ERI2A8K979 691 aaKnown RBP4.91□□□□□ -1.62
PTPN13-201ENST00000316707 H3BSA7 217 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 GPR25O00155 361 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 CABYRO75952 493 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 ALDH1A2O94788 518 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 CSH1P0DML2 217 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 CSH2P0DML3 217 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 NR2C2P49116 596 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 STEAP4Q687X5 459 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 NCCRP1Q6ZVX7 275 aaPredicted RBP4.91□□□□□ -1.62
PTPN13-201ENST00000316707 CPSF7Q8N684 471 aaKnown RBP4.91□□□□□ -1.62
PTPN13-201ENST00000316707 ZNF513Q8N8E2 541 aaPredicted RBP4.91□□□□□ -1.62
PTPN13-201ENST00000316707 DUS3LQ96G46 650 aaKnown RBP4.91□□□□□ -1.62
PTPN13-201ENST00000316707 MECRQ9BV79 373 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 DNAI2Q9GZS0 605 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 POLR3FQ9H1D9 316 aaPredicted RBP4.91□□□□□ -1.62
PTPN13-201ENST00000316707 HIPK3Q9H422 1215 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 C10orf88Q9H8K7 445 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 WDR41Q9HAD4 459 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 XPNPEP1Q9NQW7 623 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 PCSK1NQ9UHG2 260 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 USP18Q9UMW8 372 aa4.91□□□□□ -1.62
PTPN13-201ENST00000316707 MEI4A8MW99 385 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 FAM155AB1AL88 458 aaPredicted RBP4.9□□□□□ -1.62
PTPN13-201ENST00000316707 PIK3R2O00459 728 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 PPEF1O14829 653 aaPredicted RBP4.9□□□□□ -1.62
PTPN13-201ENST00000316707 AIM2O14862 343 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 ERBB2P04626 1255 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 PDGFRAP16234 1089 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 ERFP50548 548 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 CSE1LP55060 971 aaKnown RBP4.9□□□□□ -1.62
PTPN13-201ENST00000316707 SEMA5AQ13591 1074 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 MOGQ16653 247 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 UGP2Q16851 508 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 PTPN20Q4JDL3 420 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 ZNF394Q53GI3 561 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 SAMD4BQ5PRF9 694 aaKnown RBP4.9□□□□□ -1.62
PTPN13-201ENST00000316707 SEL1L3Q68CR1 1132 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 RNF111Q6ZNA4 994 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 IGDCC3Q8IVU1 814 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 TAB3Q8N5C8 712 aaPredicted RBP4.9□□□□□ -1.62
PTPN13-201ENST00000316707 SYTL5Q8TDW5 730 aaPredicted RBP4.9□□□□□ -1.62
PTPN13-201ENST00000316707 ZC3H15Q8WU90 426 aaKnown RBP4.9□□□□□ -1.62
PTPN13-201ENST00000316707 LPAR1Q92633 364 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 MYH2Q9UKX2 1941 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 C2orf71A6NGG8 1288 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 HACD1B0YJ81 288 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 GOLGA8TH3BQL2 631 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 KCNN4O15554 427 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 KCNQ2O43526 872 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 VNN1O95497 513 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 TRUB2O95900 331 aaKnown RBP4.9□□□□□ -1.62
PTPN13-201ENST00000316707 GPD1P21695 349 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 GLDCP23378 1020 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 SNAP25P60880 206 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 MRPS22P82650 360 aaKnown RBP4.9□□□□□ -1.62
PTPN13-201ENST00000316707 GAD2Q05329 585 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 ZNF423Q2M1K9 1284 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 LMBRD2Q68DH5 695 aaPredicted RBP4.9□□□□□ -1.62
PTPN13-201ENST00000316707 FRMD7Q6ZUT3 714 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 PDZD4Q76G19 769 aaPredicted RBP4.9□□□□□ -1.62
PTPN13-201ENST00000316707 CAND1Q86VP6 1230 aaKnown RBP4.9□□□□□ -1.62
PTPN13-201ENST00000316707 GIPC3Q8TF64 312 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 ISL2Q96A47 359 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 OLFM1Q99784 485 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 TRIM15Q9C019 465 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 COG4Q9H9E3 785 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.9□□□□□ -1.62
PTPN13-201ENST00000316707 SLC30A1Q9Y6M5 507 aa4.9□□□□□ -1.62
PTPN13-201ENST00000316707 TBC1D12O60347 775 aa4.9□□□□□ -1.63
PTPN13-201ENST00000316707 MPOP05164 745 aa4.9□□□□□ -1.63
PTPN13-201ENST00000316707 POLBP06746 335 aa4.9□□□□□ -1.63
PTPN13-201ENST00000316707 MYBPC1Q00872 1141 aa4.9□□□□□ -1.63
PTPN13-201ENST00000316707 TCP10Q12799 353 aa4.9□□□□□ -1.63
PTPN13-201ENST00000316707 FRG1Q14331 258 aaKnown RBP4.9□□□□□ -1.63
PTPN13-201ENST00000316707 CYTH1Q15438 398 aa4.9□□□□□ -1.63
PTPN13-201ENST00000316707 GRTP1Q5TC63 336 aa4.9□□□□□ -1.63
PTPN13-201ENST00000316707 TXNRD3NBQ6F5E7 133 aa4.9□□□□□ -1.63
PTPN13-201ENST00000316707 LRRC8BQ6P9F7 803 aa4.9□□□□□ -1.63
PTPN13-201ENST00000316707 SAMD1Q6SPF0 538 aaPredicted RBP4.9□□□□□ -1.63
PTPN13-201ENST00000316707 PLD5Q8N7P1 536 aa4.9□□□□□ -1.63
PTPN13-201ENST00000316707 ADAMTS16Q8TE57 1224 aa4.9□□□□□ -1.63
PTPN13-201ENST00000316707 ZNF516Q92618 1163 aa4.9□□□□□ -1.63
PTPN13-201ENST00000316707 NRBF2Q96F24 287 aa4.9□□□□□ -1.63
PTPN13-201ENST00000316707 SLC25A23Q9BV35 468 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms