RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 DMTF1Q9Y222 760 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 HBS1LQ9Y450 684 aaKnown RBP11.23□□□□□ -0.61
LSM3-201ENST00000306024 CFLARO15519 480 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 CBFA2T3O75081 653 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 ZNF24P17028 368 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 PEX2P28328 305 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 DLG1Q12959 904 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 NADK2Q4G0N4 442 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 DEFB128Q7Z7B8 93 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 SLC30A5Q8TAD4 765 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 HEXIM2Q96MH2 286 aaKnown RBP11.23□□□□□ -0.61
LSM3-201ENST00000306024 NXF3Q9H4D5 531 aaKnown RBP11.23□□□□□ -0.61
LSM3-201ENST00000306024 CAAP1Q9H8G2 361 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 TUBGCP4Q9UGJ1 667 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 BCAP29Q9UHQ4 241 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 UBQLN1Q9UMX0 589 aaKnown RBP11.23□□□□□ -0.61
LSM3-201ENST00000306024 AK5Q9Y6K8 562 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 DOCK5Q9H7D0 1870 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 NFICP08651 508 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 MX2P20592 715 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 SSTR3P32745 418 aaPredicted RBP11.23□□□□□ -0.61
LSM3-201ENST00000306024 NSFP46459 744 aaKnown RBP11.23□□□□□ -0.61
LSM3-201ENST00000306024 TMCO4Q5TGY1 634 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 GLB1LQ6UWU2 654 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 PASD1Q8IV76 773 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 ARHGEF19Q8IW93 802 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 WDR75Q8IWA0 830 aaKnown RBP11.23□□□□□ -0.61
LSM3-201ENST00000306024 DHX38Q92620 1227 aaKnown RBP11.23□□□□□ -0.61
LSM3-201ENST00000306024 KAT5Q92993 513 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 STRA6Q9BX79 667 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 EIF2AQ9BY44 585 aaKnown RBP11.23□□□□□ -0.61
LSM3-201ENST00000306024 SLC13A1Q9BZW2 595 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 NIF3L1Q9GZT8 377 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 HESX1Q9UBX0 185 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 COG5Q9UP83 839 aa11.23□□□□□ -0.61
LSM3-201ENST00000306024 APOBEC2Q9Y235 224 aaKnown RBP11.23□□□□□ -0.61
LSM3-201ENST00000306024 CAPN8A6NHC0 703 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 HUS1O60921 280 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 PIGRP01833 764 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 NFKBIAP25963 317 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 ATXN3P54252 364 aaPredicted RBP11.22□□□□□ -0.61
LSM3-201ENST00000306024 CCL23P55773 120 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 HDAC4P56524 1084 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 KLHL38Q2WGJ6 581 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 TCHHL1Q5QJ38 904 aaPredicted RBP11.22□□□□□ -0.61
LSM3-201ENST00000306024 LGSNQ5TDP6 509 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 LIN9Q5TKA1 542 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 ALKBH8Q96BT7 664 aaKnown RBP11.22□□□□□ -0.61
LSM3-201ENST00000306024 PLGRKTQ9HBL7 147 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 DYTNA2CJ06 578 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 RALAP11233 206 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 GEMIN4P57678 1058 aaKnown RBP11.22□□□□□ -0.61
LSM3-201ENST00000306024 SLC25A3Q00325 362 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 PCBP1Q15365 356 aaKnown RBP eCLIP11.22□□□□□ -0.61
LSM3-201ENST00000306024 ZACNQ401N2 412 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 MARCH8Q5T0T0 291 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 TDRD10Q5VZ19 366 aaKnown RBP11.22□□□□□ -0.61
LSM3-201ENST00000306024 TMEM53Q6P2H8 277 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 NUDCD3Q8IVD9 361 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.22□□□□□ -0.61
LSM3-201ENST00000306024 ZNF560Q96MR9 790 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 UTP6Q9NYH9 597 aaKnown RBP11.22□□□□□ -0.61
LSM3-201ENST00000306024 SOX13Q9UN79 622 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 PCDHB2Q9Y5E7 798 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 A0A1W2PQ45 241 aaPredicted RBP11.22□□□□□ -0.61
LSM3-201ENST00000306024 A0A1W2PQY0 241 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 ADAMTS4O75173 837 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 TM7SF2O76062 418 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 CD4P01730 458 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 FAM163BP0C2L3 166 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 FAM58BPP0C7Q3 252 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 GNA15P30679 374 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 AQP5P55064 265 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 HIF1AQ16665 826 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 EPC2Q52LR7 807 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 PALB2Q86YC2 1186 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 URGCPQ8TCY9 931 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 GAD1Q99259 594 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 FERMT1Q9BQL6 677 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 TMEM39AQ9NV64 488 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 CPSF3Q9UKF6 684 aaKnown RBP11.22□□□□□ -0.61
LSM3-201ENST00000306024 PADI3Q9ULW8 664 aa11.22□□□□□ -0.61
LSM3-201ENST00000306024 TMA7Q9Y2S6 64 aaKnown RBP11.22□□□□□ -0.61
LSM3-201ENST00000306024 MAGEC1O60732 1142 aa11.21□□□□□ -0.61
LSM3-201ENST00000306024 CUL2Q13617 745 aa11.21□□□□□ -0.61
LSM3-201ENST00000306024 PTK6Q13882 451 aa11.21□□□□□ -0.61
LSM3-201ENST00000306024 FAM117BQ6P1L5 589 aa11.21□□□□□ -0.61
LSM3-201ENST00000306024 C3orf62Q6ZUJ4 267 aa11.21□□□□□ -0.61
LSM3-201ENST00000306024 TMEM192Q8IY95 271 aa11.21□□□□□ -0.61
LSM3-201ENST00000306024 DQX1Q8TE96 717 aaKnown RBP11.21□□□□□ -0.61
LSM3-201ENST00000306024 PPP4R1Q8TF05 950 aa11.21□□□□□ -0.61
LSM3-201ENST00000306024 CCDC68Q9H2F9 335 aa11.21□□□□□ -0.61
LSM3-201ENST00000306024 LRRC19Q9H756 370 aa11.21□□□□□ -0.61
LSM3-201ENST00000306024 S100A14Q9HCY8 104 aa11.21□□□□□ -0.61
LSM3-201ENST00000306024 AJAP1Q9UKB5 411 aaPredicted RBP11.21□□□□□ -0.61
LSM3-201ENST00000306024 ZBBXA8MT70 800 aa11.21□□□□□ -0.61
LSM3-201ENST00000306024 PRPF4O43172 522 aaKnown RBP eCLIP11.21□□□□□ -0.61
LSM3-201ENST00000306024 ATP9BO43861 1147 aa11.21□□□□□ -0.61
LSM3-201ENST00000306024 SFT2D3Q587I9 215 aa11.21□□□□□ -0.61
LSM3-201ENST00000306024 DCUN1D2Q6PH85 259 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms