RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 KHDRBS3O75525 346 aaKnown RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 ASMTLO95671 621 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 CYP4F2P78329 520 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 CYP4F3Q08477 520 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 TMC4Q7Z404 712 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 NAT14Q8WUY8 206 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 BIRC8Q96P09 236 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 CCDC189A1A4V9 331 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 STX16O14662 325 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 KRT33AO76009 404 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 LRIG2O94898 1065 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 UBOX5O94941 541 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 EPCAMP16422 314 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 ITKQ08881 620 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 ELP6Q0PNE2 266 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 MAB21L1Q13394 359 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 LIN52Q52LA3 116 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 KCTD4Q8WVF5 259 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 NUDT16Q96DE0 195 aaKnown RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 FAM167AQ96KS9 214 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 SEPT5Q99719 369 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 AMNQ9BXJ7 453 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 SAV1Q9H4B6 383 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 LMCD1Q9NZU5 365 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 XPO7Q9UIA9 1087 aaKnown RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 hCG_1642624A0A1W2PR95 340 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 TLR2O60603 784 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 TSPAN19P0C672 248 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 MVKQ03426 396 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 ACVR2BQ13705 512 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 HMBOX1Q6NT76 420 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 SCYL2Q6P3W7 929 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 ARID3BQ8IVW6 561 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 IZUMO1Q8IYV9 350 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 FMR1NBQ8N0W7 255 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 PTPRN2Q92932 1015 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 TRMOQ9BU70 441 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 KIAA1024Q9UPX6 916 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 NR2E1Q9Y466 385 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 PLOD2O00469 737 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 LRRN2O75325 713 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 MPOP05164 745 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 SDC4P31431 198 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 GRIA1P42261 906 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 POU5F1Q01860 360 aaKnown RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 TGM3Q08188 693 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 ARID5BQ14865 1188 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 PON3Q15166 354 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 DENND5BQ6ZUT9 1274 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 IQCF2Q8IXL9 164 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 ATG16L2Q8NAA4 619 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 DDX54Q8TDD1 881 aaKnown RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 ZIM3Q96PE6 472 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 CNOT8Q9UFF9 292 aaKnown RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 SNX24Q9Y343 169 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 PPP2R3BQ9Y5P8 575 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 PLEKHA8P1O95397 391 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 SEC24BO95487 1268 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 FTCDO95954 541 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 SPARCP09486 303 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 HSMCR30P0CW71 290 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 NR2F6P10588 404 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 PDIA3P30101 505 aaKnown RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 EZH2Q15910 746 aaKnown RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 HKDC1Q2TB90 917 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 CRTC3Q6UUV7 619 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 NCCRP1Q6ZVX7 275 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 PACRGLQ8N7B6 248 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 DNAJB3Q8WWF6 145 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 TAMM41Q96BW9 452 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 SLC22A4Q9H015 551 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 BRD9Q9H8M2 597 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 GPHNQ9NQX3 736 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF224Q9NZL3 707 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 ANAPC2Q9UJX6 822 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 ILVBLA1L0T0 632 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 ANKDD1BA6NHY2 528 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 PPEF2O14830 753 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 FYNP06241 537 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 HIST1H2AGP0C0S8 130 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 ALADP13716 330 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF3P17036 446 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 HIST1H2ADP20671 130 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 HTR2AP28223 471 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 EIF3EP60228 445 aaKnown RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 RPL10AP62906 217 aaKnown RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 TRAF2Q12933 501 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 MPP2Q14168 576 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 EFHC2Q5JST6 749 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 TPTE2Q6XPS3 522 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 DHX40Q8IX18 779 aaKnown RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 TMEM132CQ8N3T6 1108 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 C9orf43Q8TAL5 461 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 HIST1H2AHQ96KK5 128 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 SRPK1Q96SB4 655 aaKnown RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 HIST1H2AJQ99878 128 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 H2AFJQ9BTM1 129 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 CCSER1Q9C0I3 900 aa4.94□□□□□ -1.62
CSMD3-201ENST00000297405 PNO1Q9NRX1 252 aaKnown RBP4.94□□□□□ -1.62
CSMD3-201ENST00000297405 IFT80Q9P2H3 777 aaPredicted RBP4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms