RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 DNAAF3Q8N9W5 541 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 TCP10LQ8TDR4 215 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 CKAP2Q8WWK9 683 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 ABCF3Q9NUQ8 709 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 GRID1Q9ULK0 1009 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 TEX264Q9Y6I9 313 aa11.84□□□□□ -0.51
CUX1-202ENST00000292538 UPP2O95045 317 aa11.83□□□□□ -0.51
CUX1-202ENST00000292538 MGAT1P26572 445 aa11.83□□□□□ -0.51
CUX1-202ENST00000292538 NR2C2P49116 596 aa11.83□□□□□ -0.51
CUX1-202ENST00000292538 MBTPS1Q14703 1052 aa11.83□□□□□ -0.51
CUX1-202ENST00000292538 BTBD8Q5XKL5 378 aa11.83□□□□□ -0.51
CUX1-202ENST00000292538 TAC4Q86UU9 113 aa11.83□□□□□ -0.51
CUX1-202ENST00000292538 KCTD13Q8WZ19 329 aa11.83□□□□□ -0.51
CUX1-202ENST00000292538 FERMT1Q9BQL6 677 aa11.83□□□□□ -0.51
CUX1-202ENST00000292538 IQCGQ9H095 443 aaKnown RBP11.83□□□□□ -0.51
CUX1-202ENST00000292538 DMAP1Q9NPF5 467 aaPredicted RBP11.83□□□□□ -0.51
CUX1-202ENST00000292538 CNGB3Q9NQW8 809 aa11.83□□□□□ -0.51
CUX1-202ENST00000292538 SLC27A5Q9Y2P5 690 aa11.83□□□□□ -0.51
CUX1-202ENST00000292538 TRIM49D1C9J1S8 452 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 LPXNO60711 386 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 INHAP05111 366 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 HMBSP08397 361 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 TPH1P17752 444 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 SLC5A3P53794 718 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 GRIK3Q13003 919 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 UNC5AQ6ZN44 842 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 NPWQ8N729 165 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 ATAD1Q8NBU5 361 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 LRRC8CQ8TDW0 803 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 DCAKDQ8WVC6 231 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 SERAC1Q96JX3 654 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 QKIQ96PU8 341 aaKnown RBP eCLIP11.83□□□□□ -0.526e-15■■■■□ 22.1
CUX1-202ENST00000292538 FAM111AQ96PZ2 611 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 SLC24A2Q9UI40 661 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 DNM1LO00429 736 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 ATP9BO43861 1147 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 FBXO21O94952 628 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 RAB27AP51159 221 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 PDK1Q15118 436 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 CCSAPQ6IQ19 270 aaPredicted RBP11.83□□□□□ -0.52
CUX1-202ENST00000292538 ZNF567Q8N184 647 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 RIBC1Q8N443 379 aaPredicted RBP11.83□□□□□ -0.52
CUX1-202ENST00000292538 TTC9BQ8N6N2 239 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 TSPAN18Q96SJ8 248 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 ACBD6Q9BR61 282 aa11.83□□□□□ -0.52
CUX1-202ENST00000292538 WDR6Q9NNW5 1121 aaKnown RBP11.83□□□□□ -0.52
CUX1-202ENST00000292538 ZMYND8Q9ULU4 1186 aaPredicted RBP11.83□□□□□ -0.52
CUX1-202ENST00000292538 A0A0A0MRY4 1105 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 SNX3O60493 162 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 PQBP1O60828 265 aaKnown RBP11.82□□□□□ -0.52
CUX1-202ENST00000292538 LRIG2O94898 1065 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 TOP3BO95985 862 aaKnown RBP11.82□□□□□ -0.52
CUX1-202ENST00000292538 HOXD10P28358 340 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 MAGEA9P43362 315 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 CLLU1OSQ5K130 101 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 SPATA21Q7Z572 469 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 MRPL10Q7Z7H8 261 aaKnown RBP11.82□□□□□ -0.52
CUX1-202ENST00000292538 LRRC6Q86X45 466 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 SPATA13Q96N96 652 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 SLC2A13Q96QE2 648 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 CYLDQ9NQC7 956 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 EURLQ9NYK6 297 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 DCTN4Q9UJW0 460 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 FBXW11Q9UKB1 542 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 IQANK1A0A1B0GTG1 560 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 CCDC195A0A1B0GUA6 201 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 A0A1W2PQ45 241 aaPredicted RBP11.82□□□□□ -0.52
CUX1-202ENST00000292538 A0A1W2PQY0 241 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 HHLA1C9JL84 531 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 E7ESA3 106 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 GOLGA8TH3BQL2 631 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 PPP1R12AO14974 1030 aaPredicted RBP11.82□□□□□ -0.52
CUX1-202ENST00000292538 ZNF623O75123 536 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 GCATO75600 419 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 TBX18O95935 607 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 JCHAINP01591 159 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 TAC1P20366 129 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 ABCG1P45844 678 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 RPL34P49207 117 aaKnown RBP11.82□□□□□ -0.52
CUX1-202ENST00000292538 NOMO2Q5JPE7 1267 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 FAM171A1Q5VUB5 890 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 ADGRD1Q6QNK2 874 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 BZW1Q7L1Q6 419 aaKnown RBP11.82□□□□□ -0.52
CUX1-202ENST00000292538 MIB1Q86YT6 1006 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 OR52K1Q8NGK4 314 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 DQX1Q8TE96 717 aaKnown RBP11.82□□□□□ -0.52
CUX1-202ENST00000292538 SMYD2Q9NRG4 433 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 CREBZFQ9NS37 354 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 USP15Q9Y4E8 981 aaPredicted RBP11.82□□□□□ -0.52
CUX1-202ENST00000292538 USP3Q9Y6I4 520 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 PDE4DIPQ5VU43 2346 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 TTC3P53804 2025 aa11.82□□□□□ -0.52
CUX1-202ENST00000292538 SUN1O94901 812 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 CCL23P55773 120 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 SARNPP82979 210 aaKnown RBP11.81□□□□□ -0.52
CUX1-202ENST00000292538 NR1H3Q13133 447 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 DCLRE1AQ6PJP8 1040 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 CD300LGQ6UXG3 332 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 SLC24A5Q71RS6 500 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 DBF4BQ8NFT6 615 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms