RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 RGS18Q9NS28 235 aa11.74□□□□□ -0.53
USP53-201ENST00000274030 TBC1D13Q9NVG8 400 aa11.74□□□□□ -0.53
USP53-201ENST00000274030 SHOC2Q9UQ13 582 aa11.74□□□□□ -0.53
USP53-201ENST00000274030 CRYL1Q9Y2S2 319 aa11.74□□□□□ -0.53
USP53-201ENST00000274030 DLGAP3O95886 979 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 HMGCRP04035 888 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 TGFB3P10600 412 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 GRK2P25098 689 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 ISLR2Q6UXK2 745 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 IZUMO2Q6UXV1 221 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 GPR141Q7Z602 305 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 DIP2AQ14689 1571 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 A0A096LPK6 155 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 DNALI1O14645 258 aaPredicted RBP11.73□□□□□ -0.53
USP53-201ENST00000274030 NDUFB5O43674 189 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 KLRC2P26717 231 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 MAPK1P28482 360 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 PHKG1Q16816 387 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 CCDC103Q8IW40 242 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 COPS5Q92905 334 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 GAD1Q99259 594 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 KCTD14Q9BQ13 255 aaPredicted RBP11.73□□□□□ -0.53
USP53-201ENST00000274030 HES2Q9Y543 173 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 MAGEA13PA6NCF6 341 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 VEGFAP15692 232 aaPredicted RBP11.73□□□□□ -0.53
USP53-201ENST00000274030 RBL1P28749 1068 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 MAPK9P45984 424 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 BTG3Q14201 252 aaPredicted RBP11.73□□□□□ -0.53
USP53-201ENST00000274030 APOBEC3HQ6NTF7 200 aaKnown RBP11.73□□□□□ -0.53
USP53-201ENST00000274030 UTP15Q8TED0 518 aaKnown RBP11.73□□□□□ -0.53
USP53-201ENST00000274030 MID1IP1Q9NPA3 183 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 A1CFQ9NQ94 594 aaKnown RBP11.73□□□□□ -0.53
USP53-201ENST00000274030 ACKR2O00590 384 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 BUD23O43709 281 aaKnown RBP11.73□□□□□ -0.53
USP53-201ENST00000274030 VCLP18206 1134 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 MSH3P20585 1137 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 CASP5P51878 434 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 FAAP100Q0VG06 881 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 C15orf59Q2T9L4 293 aaPredicted RBP11.73□□□□□ -0.53
USP53-201ENST00000274030 FAM83AQ86UY5 434 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 FNDC5Q8NAU1 212 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 SERAC1Q96JX3 654 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 TKTL2Q9H0I9 626 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 MAN1C1Q9NR34 630 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 RHBDL2Q9NX52 303 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 NINJ2Q9NZG7 142 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 PCDHB12Q9Y5F1 795 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 CLTCQ00610 1675 aaKnown RBP11.73□□□□□ -0.53
USP53-201ENST00000274030 ETS1P14921 441 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 CNTFP26441 200 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 CRADDP78560 199 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 ZNF268Q14587 947 aaPredicted RBP11.73□□□□□ -0.53
USP53-201ENST00000274030 TMEM119Q4V9L6 283 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 TBCELQ5QJ74 424 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 DOK6Q6PKX4 331 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 LRRN4Q8WUT4 740 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 MTG1Q9BT17 334 aaPredicted RBP11.73□□□□□ -0.53
USP53-201ENST00000274030 WDR41Q9HAD4 459 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 TAS2R14Q9NYV8 317 aa11.73□□□□□ -0.53
USP53-201ENST00000274030 TM9SF1O15321 606 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 CCT8P50990 548 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 C16orf46Q6P387 395 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 FGD2Q7Z6J4 655 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 SPATA20Q8TB22 786 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 NACC2Q96BF6 587 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 SMARCD1Q96GM5 515 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 DPY30Q9C005 99 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 XPNPEP3Q9NQH7 507 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 DDX20Q9UHI6 824 aaKnown RBP11.72□□□□□ -0.53
USP53-201ENST00000274030 RAG1P15918 1043 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 YWHAQP27348 245 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 GP5P40197 560 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 RENBPP51606 427 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 SLC12A3P55017 1021 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 CEP78Q5JTW2 689 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 RETSATQ6NUM9 610 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 CYP2R1Q6VVX0 501 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 TPGS1Q6ZTW0 290 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 TMC3Q7Z5M5 1100 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 FBXO39Q8N4B4 442 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 SPPL2AQ8TCT8 520 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 PRCCQ92733 491 aaPredicted RBP11.72□□□□□ -0.53
USP53-201ENST00000274030 GFM2Q969S9 779 aaKnown RBP11.72□□□□□ -0.53
USP53-201ENST00000274030 NMD3Q96D46 503 aaKnown RBP11.72□□□□□ -0.53
USP53-201ENST00000274030 MTFR1LQ9H019 292 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 STN1Q9H668 368 aaKnown RBP11.72□□□□□ -0.53
USP53-201ENST00000274030 PCDHA3Q9Y5H8 950 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 INPP4BO15327 924 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 NCAM2O15394 837 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 ERVK-10P10266 1014 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 ACADMP11310 421 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 HSPA13P48723 471 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 MYBPC2Q14324 1141 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 CRYMQ14894 314 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 TRAF7Q6Q0C0 670 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 MTFMTQ96DP5 389 aaKnown RBP11.72□□□□□ -0.53
USP53-201ENST00000274030 HIC2Q96JB3 615 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 CCDC3Q9BQI4 270 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 DNAJC18Q9H819 358 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 A0A0U1RQJ8 604 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms