RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 RSAD2Q8WXG1 361 aa14.58□□□□□ -0.08
SS18-201ENST00000269137 RTP4Q96DX8 246 aa14.58□□□□□ -0.08
SS18-201ENST00000269137 C1orf74Q96LT6 269 aa14.58□□□□□ -0.08
SS18-201ENST00000269137 OLFM3Q96PB7 478 aa14.58□□□□□ -0.08
SS18-201ENST00000269137 KLHL5Q96PQ7 755 aa14.58□□□□□ -0.08
SS18-201ENST00000269137 FMO2Q99518 471 aa14.58□□□□□ -0.08
SS18-201ENST00000269137 VIPAS39Q9H9C1 493 aa14.58□□□□□ -0.08
SS18-201ENST00000269137 DTLQ9NZJ0 730 aa14.58□□□□□ -0.08
SS18-201ENST00000269137 RAD54BQ9Y620 910 aa14.58□□□□□ -0.08
SS18-201ENST00000269137 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.57□□□□□ -0.08
SS18-201ENST00000269137 SPDYE4A6NLX3 237 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 H7C0C1 242 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 TGM5O43548 720 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 SASH3O75995 380 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 IGLV3-27P01718 113 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 HOXC13P31276 330 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 TNNT3P45378 269 aaPredicted RBP14.57□□□□□ -0.08
SS18-201ENST00000269137 ATP5OP48047 213 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 TUBP50607 506 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 ERVFC1P60507 584 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 TWF1Q12792 350 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 MTA1Q13330 715 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 PDZD4Q76G19 769 aaPredicted RBP14.57□□□□□ -0.08
SS18-201ENST00000269137 DNAJB7Q7Z6W7 309 aaPredicted RBP14.57□□□□□ -0.08
SS18-201ENST00000269137 ZC3H18Q86VM9 953 aaKnown RBP14.57□□□□□ -0.08
SS18-201ENST00000269137 UNC45BQ8IWX7 931 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 MRPL43Q8N983 215 aaKnown RBP14.57□□□□□ -0.08
SS18-201ENST00000269137 PSMG2Q969U7 264 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 ZNF512Q96ME7 567 aaPredicted RBP14.57□□□□□ -0.08
SS18-201ENST00000269137 GDAP1L1Q96MZ0 367 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 TCF25Q9BQ70 676 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 EMILIN2Q9BXX0 1053 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 USP29Q9HBJ7 922 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 ALG13Q9NP73 1137 aaKnown RBP14.57□□□□□ -0.08
SS18-201ENST00000269137 TRPM5Q9NZQ8 1165 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 UXTQ9UBK9 157 aaPredicted RBP14.57□□□□□ -0.08
SS18-201ENST00000269137 HBS1LQ9Y450 684 aaKnown RBP14.57□□□□□ -0.08
SS18-201ENST00000269137 ASB3Q9Y575 518 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 HACD1B0YJ81 288 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 NDC80O14777 642 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 ERCC2P18074 760 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 HSPA9P38646 679 aaKnown RBP14.57□□□□□ -0.08
SS18-201ENST00000269137 GDF10P55107 478 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 MLLT6P55198 1093 aaPredicted RBP14.57□□□□□ -0.08
SS18-201ENST00000269137 CBX1P83916 185 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 TAF12Q16514 161 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 GLIPR1L2Q4G1C9 344 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 SLC45A4Q5BKX6 768 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 C9orf50Q5SZB4 431 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 HECTD3Q5T447 861 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 ACBD5Q5T8D3 534 aaPredicted RBP14.57□□□□□ -0.08
SS18-201ENST00000269137 MANEALQ5VSG8 457 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 RHBDF2Q6PJF5 856 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 ITIH5Q86UX2 942 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 CDKL3Q8IVW4 592 aaPredicted RBP14.57□□□□□ -0.08
SS18-201ENST00000269137 FAM71DQ8N9W8 422 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 LRRC45Q96CN5 670 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 CCSER2Q9H7U1 834 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 MTRF1LQ9UGC7 380 aaKnown RBP14.57□□□□□ -0.08
SS18-201ENST00000269137 SLC12A6Q9UHW9 1150 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 MFHAS1Q9Y4C4 1052 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 SNX10Q9Y5X0 201 aa14.57□□□□□ -0.08
SS18-201ENST00000269137 C2orf71A6NGG8 1288 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 C1RP00736 705 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 IFNB1P01574 187 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 APOEP02649 317 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 ZSCAN5DPP0CG00 497 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 ETS1P14921 441 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 EPHB2P29323 1055 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 ATP5C1P36542 298 aaKnown RBP14.56□□□□□ -0.08
SS18-201ENST00000269137 VPS41P49754 854 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 PDK1Q15118 436 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 ARTNQ5T4W7 220 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 CCDC149Q6ZUS6 474 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 PRUNE1Q86TP1 453 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 ATP6V0D2Q8N8Y2 350 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 POF1BQ8WVV4 589 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 QKIQ96PU8 341 aaKnown RBP eCLIP14.56□□□□□ -0.081e-6■■■■■ 30.7
SS18-201ENST00000269137 C17orf80Q9BSJ5 609 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 TSPYL1Q9H0U9 437 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 C10orf88Q9H8K7 445 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 ENTPD7Q9NQZ7 604 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 TLR9Q9NR96 1032 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 FAM53CQ9NYF3 392 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 DNMT3LQ9UJW3 386 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 NEU3Q9UQ49 428 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 NR2E3Q9Y5X4 410 aa14.56□□□□□ -0.08
SS18-201ENST00000269137 SLC12A8A0AV02 714 aa14.55□□□□□ -0.08
SS18-201ENST00000269137 DNALI1O14645 258 aaPredicted RBP14.55□□□□□ -0.08
SS18-201ENST00000269137 MFSD11O43934 449 aa14.55□□□□□ -0.08
SS18-201ENST00000269137 ZNF189O75820 626 aaPredicted RBP14.55□□□□□ -0.08
SS18-201ENST00000269137 DNAJB1P25685 340 aa14.55□□□□□ -0.08
SS18-201ENST00000269137 CA8P35219 290 aa14.55□□□□□ -0.08
SS18-201ENST00000269137 RPL22P35268 128 aaKnown RBP14.55□□□□□ -0.08
SS18-201ENST00000269137 MAGEA10P43363 369 aaPredicted RBP14.55□□□□□ -0.08
SS18-201ENST00000269137 ITGA8P53708 1063 aa14.55□□□□□ -0.08
SS18-201ENST00000269137 GPS1Q13098 491 aa14.55□□□□□ -0.08
SS18-201ENST00000269137 P3H1Q32P28 736 aa14.55□□□□□ -0.08
SS18-201ENST00000269137 RTL10Q7L3V2 364 aa14.55□□□□□ -0.08
SS18-201ENST00000269137 MIB1Q86YT6 1006 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms