RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 STAP1Q9ULZ2 295 aa17.4■□□□□ 0.38
SDCBP-201ENST00000260130 NEDD8-MDP1E9PL57 170 aa17.4■□□□□ 0.38
SDCBP-201ENST00000260130 M0QYT0 321 aa17.4■□□□□ 0.38
SDCBP-201ENST00000260130 DDX3XO00571 662 aaKnown RBP eCLIP17.4■□□□□ 0.384e-16■□□□□ 11.2
SDCBP-201ENST00000260130 TYRP14679 529 aa17.4■□□□□ 0.38
SDCBP-201ENST00000260130 FLT3P36888 993 aa17.4■□□□□ 0.38
SDCBP-201ENST00000260130 GSCP56915 257 aaPredicted RBP17.4■□□□□ 0.38
SDCBP-201ENST00000260130 TUBB4BP68371 445 aa17.4■□□□□ 0.38
SDCBP-201ENST00000260130 ZC3H12AQ5D1E8 599 aaKnown RBP17.4■□□□□ 0.38
SDCBP-201ENST00000260130 C12orf40Q86WS4 652 aa17.4■□□□□ 0.38
SDCBP-201ENST00000260130 ETFBKMTQ8IXQ9 262 aa17.4■□□□□ 0.38
SDCBP-201ENST00000260130 MCOLN2Q8IZK6 566 aa17.4■□□□□ 0.38
SDCBP-201ENST00000260130 NT5C3BQ969T7 300 aa17.4■□□□□ 0.38
SDCBP-201ENST00000260130 VCPIP1Q96JH7 1222 aa17.4■□□□□ 0.38
SDCBP-201ENST00000260130 RBM12Q9NTZ6 932 aaKnown RBP17.4■□□□□ 0.38
SDCBP-201ENST00000260130 SYNJ2BP-COX16A0A087WUM0 186 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 TMCO5BA8MYB1 307 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 ACSL4O60488 711 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 APOEP02649 317 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 HNRNPH3P31942 346 aaKnown RBP17.39■□□□□ 0.37
SDCBP-201ENST00000260130 NME3Q13232 169 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 SLC25A52Q3SY17 297 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 DTWD2Q8NBA8 298 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 C3orf20Q8ND61 904 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 OR8K1Q8NGG5 319 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 BHMTQ93088 406 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 XPO6Q96QU8 1125 aaKnown RBP17.39■□□□□ 0.37
SDCBP-201ENST00000260130 PNKPQ96T60 521 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 ARFGAP3Q9NP61 516 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 COX16Q9P0S2 106 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 WDFY4Q6ZS81 3184 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 EGFP01133 1207 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 CYBBP04839 570 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 SLC2A3P11169 496 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 KRT3P12035 628 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 FECHP22830 423 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 CCR1P32246 355 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 SULT1E1P49888 294 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 FYB2Q5VWT5 728 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 RAD9BQ6WBX8 426 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 VPS36Q86VN1 386 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 SYNPOQ8N3V7 929 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 RNF34Q969K3 372 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 DNAJC7Q99615 494 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 SELENOOQ9BVL4 669 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 PLK2Q9NYY3 685 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 DEC1Q9P2X7 70 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 ADAMTS1Q9UHI8 967 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 SLC12A6Q9UHW9 1150 aa17.39■□□□□ 0.37
SDCBP-201ENST00000260130 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.38■□□□□ 0.37
SDCBP-201ENST00000260130 CACNG3O60359 315 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 TULP3O75386 442 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 MOCS2O96007 188 aaPredicted RBP17.38■□□□□ 0.37
SDCBP-201ENST00000260130 F9P00740 461 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 PLEKP08567 350 aaPredicted RBP17.38■□□□□ 0.37
SDCBP-201ENST00000260130 TFE3P19532 575 aaPredicted RBP17.38■□□□□ 0.37
SDCBP-201ENST00000260130 MPPE1Q53F39 396 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 TRNP1Q6NT89 227 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 EMC1Q8N766 993 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 CEP112Q8N8E3 955 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 PGAP3Q96FM1 320 aaPredicted RBP17.38■□□□□ 0.37
SDCBP-201ENST00000260130 P2RY11Q96G91 374 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 BTN2A3PQ96KV6 586 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 DDX50Q9BQ39 737 aaKnown RBP17.38■□□□□ 0.37
SDCBP-201ENST00000260130 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.38■□□□□ 0.37
SDCBP-201ENST00000260130 ADAM33Q9BZ11 813 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 CHRDQ9H2X0 955 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 LZTFL1Q9NQ48 299 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 CALCOCO1Q9P1Z2 691 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 GOLGA6L7A0A1B0GV03 622 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 KCNU1A8MYU2 1149 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 GFRA2O00451 464 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 TSPAN3O60637 253 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 RTN2O75298 545 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 SEC31AO94979 1220 aaKnown RBP17.38■□□□□ 0.37
SDCBP-201ENST00000260130 PENKP01210 267 aaPredicted RBP17.38■□□□□ 0.37
SDCBP-201ENST00000260130 FTLP02792 175 aaPredicted RBP17.38■□□□□ 0.37
SDCBP-201ENST00000260130 FBXO43Q4G163 708 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 PREPLQ4J6C6 727 aaPredicted RBP17.38■□□□□ 0.37
SDCBP-201ENST00000260130 FAM133BQ5BKY9 247 aaKnown RBP17.38■□□□□ 0.37
SDCBP-201ENST00000260130 OTUD1Q5VV17 481 aaPredicted RBP17.38■□□□□ 0.37
SDCBP-201ENST00000260130 NADSYN1Q6IA69 706 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 TMTC1Q8IUR5 882 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 ATP6V0D2Q8N8Y2 350 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 JOSD2Q8TAC2 188 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 DDI1Q8WTU0 396 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 TMA16Q96EY4 203 aaKnown RBP17.38■□□□□ 0.37
SDCBP-201ENST00000260130 CFAP57Q96MR6 1250 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 TBCBQ99426 244 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 PARD6BQ9BYG5 372 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 ARHGEF4Q9NR80 690 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 TMEM51Q9NW97 253 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 ARHGAP20Q9P2F6 1191 aa17.38■□□□□ 0.37
SDCBP-201ENST00000260130 TCRBV5S1A1TA0A578 114 aa17.37■□□□□ 0.37
SDCBP-201ENST00000260130 SIGLEC16A6NMB1 481 aa17.37■□□□□ 0.37
SDCBP-201ENST00000260130 GALR2O43603 387 aaPredicted RBP17.37■□□□□ 0.37
SDCBP-201ENST00000260130 GJB6O95452 261 aa17.37■□□□□ 0.37
SDCBP-201ENST00000260130 PDGFRAP16234 1089 aa17.37■□□□□ 0.37
SDCBP-201ENST00000260130 ABCB4P21439 1286 aa17.37■□□□□ 0.37
SDCBP-201ENST00000260130 RRM1P23921 792 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms