RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 CSF2RAP15509 400 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 ERCC2P18074 760 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 CCR1P32246 355 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 KCNJ11Q14654 390 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 PPP2R5DQ14738 602 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 PRKD1Q15139 912 aaPredicted RBP15.37■□□□□ 0.05
CCDC47-201ENST00000225726 HIF1AQ16665 826 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 SPOUT1Q5T280 376 aaKnown RBP15.37■□□□□ 0.05
CCDC47-201ENST00000225726 HEATR6Q6AI08 1181 aaKnown RBP15.37■□□□□ 0.05
CCDC47-201ENST00000225726 TMEM199Q8N511 208 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 SH2D3CQ8N5H7 860 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 UHMK1Q8TAS1 419 aaKnown RBP15.37■□□□□ 0.05
CCDC47-201ENST00000225726 ZNF558Q96NG5 402 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 CRISPLD1Q9H336 500 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 LRRC4CQ9HCJ2 640 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 PSD3Q9NYI0 1048 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 XPO7Q9UIA9 1087 aaKnown RBP15.37■□□□□ 0.05
CCDC47-201ENST00000225726 PPP1R12AO14974 1030 aaPredicted RBP15.36■□□□□ 0.05
CCDC47-201ENST00000225726 C1QTNF8P60827 252 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 WDR5P61964 334 aaKnown RBP15.36■□□□□ 0.05
CCDC47-201ENST00000225726 DEFB103AP81534 67 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 C6orf118Q5T5N4 469 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 MFSD5Q6N075 450 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 CMTR2Q8IYT2 770 aaKnown RBP15.36■□□□□ 0.05
CCDC47-201ENST00000225726 FBXO32Q969P5 355 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 SFMBT1Q9UHJ3 866 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 CARNS1A5YM72 827 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 ALOX15BO15296 676 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 SOAT2O75908 522 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 RAG1P15918 1043 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 HTR7P34969 479 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 TAB3Q8N5C8 712 aaPredicted RBP15.36■□□□□ 0.05
CCDC47-201ENST00000225726 HTR3CQ8WXA8 447 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 PGM2Q96G03 612 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 CEP295NLQ96MC4 621 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 FERMT1Q9BQL6 677 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 KLC2Q9H0B6 622 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 GREB1Q4ZG55 1949 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 TCRBV7S3A2A0A539 114 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 TMEM63AO94886 807 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 GLUD2P49448 558 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 PSEN1P49768 467 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 LBX1P52954 281 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 PPP1R21Q6ZMI0 780 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 C9orf72Q96LT7 481 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 RAB6BQ9NRW1 208 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 CLIC5Q9NZA1 410 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 BCCIPQ9P287 314 aaKnown RBP eCLIP15.36■□□□□ 0.05
CCDC47-201ENST00000225726 SNX10Q9Y5X0 201 aa15.36■□□□□ 0.05
CCDC47-201ENST00000225726 GOLGA8MH3BSY2 632 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 SOD2P04179 222 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 VAV1P15498 845 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 MAGEA6P43360 314 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 DUSP4Q13115 394 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 SLC39A11Q8N1S5 342 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 CCDC110Q8TBZ0 833 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 GPR152Q8TDT2 470 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 LRRN4Q8WUT4 740 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 HERC2P3Q9BVR0 1158 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 TMEM106CQ9BVX2 250 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 TLR8Q9NR97 1041 aaKnown RBP15.35■□□□□ 0.05
CCDC47-201ENST00000225726 OLA1Q9NTK5 396 aaKnown RBP15.35■□□□□ 0.05
CCDC47-201ENST00000225726 WDR27A2RRH5 827 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 E7ESA3 106 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 RASGRF2O14827 1237 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 MSI1O43347 362 aaKnown RBP15.35■□□□□ 0.05
CCDC47-201ENST00000225726 BAIAP3O94812 1187 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 LRIG2O94898 1065 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 LAG3P18627 525 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 PDIA2Q13087 525 aaKnown RBP15.35■□□□□ 0.05
CCDC47-201ENST00000225726 EMC10Q5UCC4 262 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 KIAA1841Q6NSI8 718 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 KDM7AQ6ZMT4 941 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 CCDC33Q8N5R6 958 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 FRMD8Q9BZ67 464 aaPredicted RBP15.35■□□□□ 0.05
CCDC47-201ENST00000225726 TLR6Q9Y2C9 796 aa15.35■□□□□ 0.05
CCDC47-201ENST00000225726 NCAM2O15394 837 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 ADAM12O43184 909 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 TCEA3O75764 348 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 STK10O94804 968 aaKnown RBP15.34■□□□□ 0.05
CCDC47-201ENST00000225726 NR1D1P20393 614 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 GAD2Q05329 585 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 EPS8L3Q8TE67 593 aaKnown RBP15.34■□□□□ 0.05
CCDC47-201ENST00000225726 TLCD1Q96CP7 247 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 LGMNQ99538 433 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 BRD8Q9H0E9 1235 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 SERPINB6P35237 376 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 CBLBQ13191 982 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 FNBP1LQ5T0N5 605 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 ZBED8Q8IZ13 594 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 COLGALT1Q8NBJ5 622 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 NOVA2Q9UNW9 492 aaKnown RBP15.34■□□□□ 0.05
CCDC47-201ENST00000225726 A0A0A0MRY4 1105 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 KCNU1A8MYU2 1149 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 PAGE1O75459 146 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 SLC2A3P11169 496 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 EPHB2P29323 1055 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 OR1D2P34982 312 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 SKOR1P84550 965 aa15.34■□□□□ 0.05
CCDC47-201ENST00000225726 BTG3Q14201 252 aaPredicted RBP15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms