RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	POLR3B	Q9NW08	1133 aa	Predicted RBP	27.76	■■■□□ 2.03
VEGFA-231	ENST00000640499	HCN2	Q9UL51	889 aa		27.76	■■■□□ 2.03
VEGFA-231	ENST00000640499	TCRBV5S1A1T	A0A578	114 aa		27.75	■■■□□ 2.03
VEGFA-231	ENST00000640499	KCNU1	A8MYU2	1149 aa		27.75	■■■□□ 2.03
VEGFA-231	ENST00000640499	ACSL4	O60488	711 aa		27.75	■■■□□ 2.03
VEGFA-231	ENST00000640499	KAT7	O95251	611 aa		27.75	■■■□□ 2.03
VEGFA-231	ENST00000640499	GJB6	O95452	261 aa		27.75	■■■□□ 2.03
VEGFA-231	ENST00000640499	CDK17	Q00537	523 aa		27.75	■■■□□ 2.03
VEGFA-231	ENST00000640499	KDSR	Q06136	332 aa		27.75	■■■□□ 2.03
VEGFA-231	ENST00000640499	MON1B	Q7L1V2	547 aa		27.75	■■■□□ 2.03
VEGFA-231	ENST00000640499	SPEM1	Q8N4L4	309 aa		27.75	■■■□□ 2.03
VEGFA-231	ENST00000640499	PRMT8	Q9NR22	394 aa	Predicted RBP	27.75	■■■□□ 2.03
VEGFA-231	ENST00000640499	ARHGEF4	Q9NR80	690 aa		27.75	■■■□□ 2.03
VEGFA-231	ENST00000640499	SEPT11	Q9NVA2	429 aa	Known RBP	27.75	■■■□□ 2.03
VEGFA-231	ENST00000640499	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	27.75	■■■□□ 2.03	4e-6	■□□□□ 10.5
VEGFA-231	ENST00000640499	DDX3X	O00571	662 aa	Known RBP eCLIP	27.74	■■■□□ 2.03	7e-12	■■■■□ 20
VEGFA-231	ENST00000640499	TSPAN3	O60637	253 aa		27.74	■■■□□ 2.03
VEGFA-231	ENST00000640499	TDGF1	P13385	188 aa		27.74	■■■□□ 2.03
VEGFA-231	ENST00000640499	TNFAIP3	P21580	790 aa		27.74	■■■□□ 2.03
VEGFA-231	ENST00000640499	SATB1	Q01826	763 aa		27.74	■■■□□ 2.03
VEGFA-231	ENST00000640499	ACAD10	Q6JQN1	1059 aa		27.74	■■■□□ 2.03
VEGFA-231	ENST00000640499	RFWD3	Q6PCD5	774 aa		27.74	■■■□□ 2.03
VEGFA-231	ENST00000640499	BNIPL	Q7Z465	357 aa		27.74	■■■□□ 2.03
VEGFA-231	ENST00000640499	DNAAF5	Q86Y56	855 aa		27.74	■■■□□ 2.03
VEGFA-231	ENST00000640499	FAM204A	Q9H8W3	233 aa		27.74	■■■□□ 2.03
VEGFA-231	ENST00000640499	DNAJC17	Q9NVM6	304 aa	Known RBP	27.74	■■■□□ 2.03
VEGFA-231	ENST00000640499	DDIT4	Q9NX09	232 aa		27.74	■■■□□ 2.03
VEGFA-231	ENST00000640499	ADAM22	Q9P0K1	906 aa		27.74	■■■□□ 2.03
VEGFA-231	ENST00000640499	DEC1	Q9P2X7	70 aa		27.74	■■■□□ 2.03
VEGFA-231	ENST00000640499	NSF	P46459	744 aa	Known RBP	27.73	■■■□□ 2.03
VEGFA-231	ENST00000640499	GSC	P56915	257 aa	Predicted RBP	27.73	■■■□□ 2.03
VEGFA-231	ENST00000640499	ZBED6	P86452	979 aa		27.73	■■■□□ 2.03
VEGFA-231	ENST00000640499	EMC10	Q5UCC4	262 aa		27.73	■■■□□ 2.03
VEGFA-231	ENST00000640499	TSSK4	Q6SA08	328 aa		27.73	■■■□□ 2.03
VEGFA-231	ENST00000640499	ARC	Q7LC44	396 aa		27.73	■■■□□ 2.03
VEGFA-231	ENST00000640499	EMC1	Q8N766	993 aa		27.73	■■■□□ 2.03
VEGFA-231	ENST00000640499	MSANTD4	Q8NCY6	345 aa		27.73	■■■□□ 2.03
VEGFA-231	ENST00000640499	JOSD2	Q8TAC2	188 aa		27.73	■■■□□ 2.03
VEGFA-231	ENST00000640499	SYN2	Q92777	582 aa	Predicted RBP	27.73	■■■□□ 2.03
VEGFA-231	ENST00000640499	IER2	Q9BTL4	223 aa		27.73	■■■□□ 2.03
VEGFA-231	ENST00000640499	ANLN	Q9NQW6	1124 aa		27.73	■■■□□ 2.03
VEGFA-231	ENST00000640499	METTL5	Q9NRN9	209 aa	Known RBP	27.73	■■■□□ 2.03
VEGFA-231	ENST00000640499	SYNJ2BP-COX16	A0A087WUM0	186 aa		27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499		I6L893	689 aa	Predicted RBP	27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499		M0QYT0	321 aa		27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499	HOXD9	P28356	352 aa	Predicted RBP	27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499	GRIA2	P42262	883 aa		27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499	KIR2DL1	P43626	348 aa	Predicted RBP	27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499	SLC11A2	P49281	568 aa		27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499	PTPN5	P54829	565 aa		27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499	KLHL30	Q0D2K2	578 aa		27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499	FBXO43	Q4G163	708 aa		27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499	PIK3R6	Q5UE93	754 aa		27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499	USP33	Q8TEY7	942 aa		27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499	EXOC4	Q96A65	974 aa		27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499	PRICKLE1	Q96MT3	831 aa	Predicted RBP	27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499	NUCKS1	Q9H1E3	243 aa	Known RBP	27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499	PIGV	Q9NUD9	493 aa		27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499	COX16	Q9P0S2	106 aa		27.72	■■■□□ 2.03
VEGFA-231	ENST00000640499	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	CHURC1-FNTB	B4DL54	471 aa		27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	CBFA2T2	O43439	604 aa		27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	LAMTOR5	O43504	91 aa		27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	MOCS2	O96007	188 aa	Predicted RBP	27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	APOD	P05090	189 aa		27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	SP9	P0CG40	484 aa		27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	CASP14	P31944	242 aa		27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	ATXN1	P54253	815 aa	Known RBP	27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	SEC13	P55735	322 aa		27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	NME3	Q13232	169 aa		27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	RAB6C	Q53S08	254 aa		27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	RNF43	Q68DV7	783 aa		27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	VSTM4	Q8IW00	320 aa		27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	TERB1	Q8NA31	727 aa		27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	RPLP0P6	Q8NHW5	317 aa		27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	PGAP3	Q96FM1	320 aa	Predicted RBP	27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	XPO6	Q96QU8	1125 aa	Known RBP	27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	TBCB	Q99426	244 aa		27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	RAB6C	Q9H0N0	254 aa		27.71	■■■□□ 2.03
VEGFA-231	ENST00000640499	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	27.71	■■■□□ 2.03	2e-7	■■■■□ 22.2
VEGFA-231	ENST00000640499	PRRT4	C9JH25	899 aa		27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499		K7ESF4	209 aa		27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	PLEK	P08567	350 aa	Predicted RBP	27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	C1QBP	Q07021	282 aa	Known RBP	27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	SLC25A52	Q3SY17	297 aa		27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	MPPE1	Q53F39	396 aa		27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	SPECC1L	Q69YQ0	1117 aa		27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	GRAMD4	Q6IC98	578 aa		27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	SARM1	Q6SZW1	724 aa		27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	MCOLN2	Q8IZK6	566 aa		27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	DDI1	Q8WTU0	396 aa		27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	IQCD	Q96DY2	449 aa		27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	TMA16	Q96EY4	203 aa	Known RBP	27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	CFAP57	Q96MR6	1250 aa		27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	PRMT1	Q99873	361 aa	Known RBP	27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	RRN3	Q9NYV6	651 aa		27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	FBXO4	Q9UKT5	387 aa		27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	LUC7L2	Q9Y383	392 aa	Known RBP	27.7	■■■□□ 2.02
VEGFA-231	ENST00000640499	C2CD4B	A6NLJ0	364 aa		27.69	■■■□□ 2.02
VEGFA-231	ENST00000640499	TMCO5B	A8MYB1	307 aa		27.69	■■■□□ 2.02

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