RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 ZDHHC17Q8IUH5 632 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 PHC3Q8NDX5 983 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 FAM192AQ9GZU8 254 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 DPP3Q9NY33 737 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 A6NJR5 290 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 KLHL2O95198 593 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 C22orf31O95567 290 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 L1CAMP32004 1257 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 CPOXP36551 454 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 SLC10A2Q12908 348 aaPredicted RBP20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 PPP1R26Q5T8A7 1209 aaPredicted RBP20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 HEATR6Q6AI08 1181 aaKnown RBP20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 NT5DC4Q86YG4 428 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 IFNLR1Q8IU57 520 aaPredicted RBP20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 UPF1Q92900 1129 aaKnown RBP eCLIP20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 ATP2A3Q93084 1043 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 FAM96AQ9H5X1 160 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 TOP3BO95985 862 aaKnown RBP20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 CRABP2P29373 138 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 PTPN9P43378 593 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 TUBB3Q13509 450 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 FOXB2Q5VYV0 432 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 AAGABQ6PD74 315 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 KCNT2Q6UVM3 1135 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 ADGRG6Q86SQ4 1221 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 TTC30AQ86WT1 665 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 CDKL2Q92772 493 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 PPP1R12CQ9BZL4 782 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 ETAA1Q9NY74 926 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 DNAJC16Q9Y2G8 782 aa20.75■□□□□ 0.91
SYNGAP1-227ENST00000638142 PAPSS1O43252 624 aaPredicted RBP20.74■□□□□ 0.91
SYNGAP1-227ENST00000638142 GRIA1P42261 906 aa20.74■□□□□ 0.91
SYNGAP1-227ENST00000638142 NAB1Q13506 487 aa20.74■□□□□ 0.91
SYNGAP1-227ENST00000638142 HIC1Q14526 733 aa20.74■□□□□ 0.91
SYNGAP1-227ENST00000638142 TEDDM1Q5T9Z0 273 aa20.74■□□□□ 0.91
SYNGAP1-227ENST00000638142 IZUMO2Q6UXV1 221 aa20.74■□□□□ 0.91
SYNGAP1-227ENST00000638142 SCUBE3Q8IX30 993 aa20.74■□□□□ 0.91
SYNGAP1-227ENST00000638142 SLC35F5Q8WV83 523 aa20.74■□□□□ 0.91
SYNGAP1-227ENST00000638142 APOL6Q9BWW8 343 aa20.74■□□□□ 0.91
SYNGAP1-227ENST00000638142 MORF4L1Q9UBU8 362 aa20.74■□□□□ 0.91
SYNGAP1-227ENST00000638142 HESX1Q9UBX0 185 aa20.74■□□□□ 0.91
SYNGAP1-227ENST00000638142 GTF2IRD1Q9UHL9 959 aa20.74■□□□□ 0.91
SYNGAP1-227ENST00000638142 EMCNQ9ULC0 261 aa20.74■□□□□ 0.91
SYNGAP1-227ENST00000638142 APOBEC2Q9Y235 224 aaKnown RBP20.74■□□□□ 0.91
SYNGAP1-227ENST00000638142 PPP2R3BQ9Y5P8 575 aa20.74■□□□□ 0.91
SYNGAP1-227ENST00000638142 FGF3P11487 239 aaPredicted RBP20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 FDFT1P37268 417 aa20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 NIPAL4Q0D2K0 466 aa20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 RABGAP1LQ5R372 815 aa20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 CPB2Q96IY4 423 aa20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 ZNF778Q96MU6 729 aa20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 ECSITQ9BQ95 431 aa20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 DHX35Q9H5Z1 703 aaKnown RBP20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 A0A088AWK7 358 aa20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 PLIN3O60664 434 aa20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 ALDOAP04075 364 aaKnown RBP20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 SLC1A6P48664 564 aa20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 IRX4P78413 519 aa20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 N4BP2L1Q5TBK1 243 aaPredicted RBP20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 CCNJLQ8IV13 435 aa20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 FGD4Q96M96 766 aa20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 TTC1Q99614 292 aa20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 DCDC2Q9UHG0 476 aa20.73■□□□□ 0.91
SYNGAP1-227ENST00000638142 A0A087WZ62 844 aa20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 CSDE1O75534 798 aaKnown RBP20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 SERPINE1P05121 402 aa20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 C6orf222P0C671 652 aaPredicted RBP20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 MYL4P12829 197 aa20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 ARF4P18085 180 aaPredicted RBP20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 RPL10AP62906 217 aaKnown RBP20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 PACS1Q6VY07 963 aa20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 HACE1Q8IYU2 909 aa20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 FDXACB1Q9BRP7 624 aaPredicted RBP20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 C11orf84Q9BUA3 381 aaPredicted RBP20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 AP4E1Q9UPM8 1137 aa20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 EVPLQ92817 2033 aa20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 ZSWIM8A7E2V4 1837 aa20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 WDR27A2RRH5 827 aa20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 ITM2AO43736 263 aa20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 PDE1CQ14123 709 aaPredicted RBP20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 C16orf46Q6P387 395 aa20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 CENPIQ92674 756 aaPredicted RBP20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 CSPG4P5Q96PW8 444 aa20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 CCDC28BQ9BUN5 200 aa20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 XPNPEP3Q9NQH7 507 aa20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 PPM1HQ9ULR3 514 aa20.72■□□□□ 0.91
SYNGAP1-227ENST00000638142 A0A0A0MRY4 1105 aa20.71■□□□□ 0.91
SYNGAP1-227ENST00000638142 HACD1B0YJ81 288 aa20.71■□□□□ 0.91
SYNGAP1-227ENST00000638142 TPP1O14773 563 aa20.71■□□□□ 0.91
SYNGAP1-227ENST00000638142 LYPLA1O75608 230 aaPredicted RBP20.71■□□□□ 0.91
SYNGAP1-227ENST00000638142 AP1G2O75843 785 aa20.71■□□□□ 0.91
SYNGAP1-227ENST00000638142 GRK2P25098 689 aa20.71■□□□□ 0.91
SYNGAP1-227ENST00000638142 ZNF484Q5JVG2 852 aa20.71■□□□□ 0.91
SYNGAP1-227ENST00000638142 EFHC1Q5JVL4 640 aa20.71■□□□□ 0.91
SYNGAP1-227ENST00000638142 CASC4Q6P4E1 433 aa20.71■□□□□ 0.91
SYNGAP1-227ENST00000638142 DENND5BQ6ZUT9 1274 aa20.71■□□□□ 0.91
SYNGAP1-227ENST00000638142 ACOT1Q86TX2 421 aa20.71■□□□□ 0.91
SYNGAP1-227ENST00000638142 PPP4R1Q8TF05 950 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms