RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 TNNC1P63316 161 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 NFKB2Q00653 900 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 ARID5AQ03989 594 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 WDR72Q3MJ13 1102 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 FNDC3BQ53EP0 1204 aaKnown RBP15.28■□□□□ 0.04
CLN3-249ENST00000636685 SFMBT2Q5VUG0 894 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 TRAPPC11Q7Z392 1133 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 KANSL1Q7Z3B3 1105 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 SYCP3Q8IZU3 236 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 GPD1LQ8N335 351 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 EXD3Q8N9H8 876 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 CYB5D2Q8WUJ1 264 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 LARP4BQ92615 738 aaKnown RBP15.28■□□□□ 0.04
CLN3-249ENST00000636685 SKA1Q96BD8 255 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 SMARCD1Q96GM5 515 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 VCPIP1Q96JH7 1222 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 SMOQ99835 787 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 LLPHQ9BRT6 129 aaKnown RBP15.28■□□□□ 0.04
CLN3-249ENST00000636685 DPH1Q9BZG8 443 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 NMUR1Q9HB89 426 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 KRT82Q9NSB4 513 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 A0A1W2PR77 199 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 CYP26A1O43174 497 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 DXOO77932 396 aaKnown RBP15.27■□□□□ 0.04
CLN3-249ENST00000636685 GCNT3O95395 438 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 FAM163BP0C2L3 166 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 ACP1P24666 158 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 CD38P28907 300 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 ARRB1P49407 418 aaPredicted RBP15.27■□□□□ 0.04
CLN3-249ENST00000636685 E2F5Q15329 346 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 PROX2Q3B8N5 592 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 CBWD2Q8IUF1 395 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 LSMEM2Q8N112 164 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 RASSF8Q8NHQ8 419 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 AK8Q96MA6 479 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 TMEM245Q9H330 911 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 FBXO44Q9H4M3 255 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 PRSS16Q9NQE7 514 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 IGSF5Q9NSI5 407 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 SSUH2Q9Y2M2 353 aa15.27■□□□□ 0.04
CLN3-249ENST00000636685 TDRD6O60522 2096 aaKnown RBP15.27■□□□□ 0.03
CLN3-249ENST00000636685 DOCK9Q9BZ29 2069 aa15.26■□□□□ 0.03
CLN3-249ENST00000636685 A0A1W2PQH9 124 aa15.26■□□□□ 0.03
CLN3-249ENST00000636685 K7ENP7 123 aa15.26■□□□□ 0.03
CLN3-249ENST00000636685 TIMM44O43615 452 aa15.26■□□□□ 0.03
CLN3-249ENST00000636685 USP12O75317 370 aa15.26■□□□□ 0.03
CLN3-249ENST00000636685 RARGP13631 454 aa15.26■□□□□ 0.03
CLN3-249ENST00000636685 ERVPABLB-1P60509 514 aa15.26■□□□□ 0.03
CLN3-249ENST00000636685 HMGN5P82970 282 aaKnown RBP15.26■□□□□ 0.03
CLN3-249ENST00000636685 E2F1Q01094 437 aa15.26■□□□□ 0.03
CLN3-249ENST00000636685 ZBTB16Q05516 673 aa15.26■□□□□ 0.03
CLN3-249ENST00000636685 TTC31Q49AM3 519 aaPredicted RBP15.26■□□□□ 0.03
CLN3-249ENST00000636685 C10orf120Q5SQS8 335 aa15.26■□□□□ 0.03
CLN3-249ENST00000636685 ARL6IP4Q66PJ3 421 aaKnown RBP15.26■□□□□ 0.03
CLN3-249ENST00000636685 INO80CQ6PI98 192 aaPredicted RBP15.26■□□□□ 0.03
CLN3-249ENST00000636685 ZNF574Q6ZN55 896 aaPredicted RBP15.26■□□□□ 0.03
CLN3-249ENST00000636685 GPRIN1Q7Z2K8 1008 aa15.26■□□□□ 0.03
CLN3-249ENST00000636685 FUKQ8N0W3 1084 aa15.26■□□□□ 0.03
CLN3-249ENST00000636685 FGFBP2Q9BYJ0 223 aa15.26■□□□□ 0.03
CLN3-249ENST00000636685 ASCL3Q9NQ33 180 aa15.26■□□□□ 0.03
CLN3-249ENST00000636685 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.26■□□□□ 0.03
CLN3-249ENST00000636685 KIF26BQ2KJY2 2108 aa15.26■□□□□ 0.03
CLN3-249ENST00000636685 ZNF233A6NK53 670 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 HMBSP08397 361 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 CCDC130P13994 396 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 CHKAP35790 457 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 LSSP48449 732 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 GALCP54803 685 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 MAP3K7CLP57077 242 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 NXPH1P58417 271 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 GRIN1Q05586 938 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 SURF1Q15526 300 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 RILPL1Q5EBL4 403 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 KLHDC10Q6PID8 442 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 NCEH1Q6PIU2 408 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 WDR49Q8IV35 697 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 GANCQ8TET4 914 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 SMYD3Q9H7B4 428 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 POLR1BQ9H9Y6 1135 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 SEL1LQ9UBV2 794 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 SERGEFQ9UGK8 458 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 SCML2Q9UQR0 700 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 ZNF510Q9Y2H8 683 aa15.25■□□□□ 0.03
CLN3-249ENST00000636685 TRIM38O00635 465 aa15.24■□□□□ 0.03
CLN3-249ENST00000636685 SIGLEC6O43699 453 aa15.24■□□□□ 0.03
CLN3-249ENST00000636685 GP1BBP13224 206 aa15.24■□□□□ 0.03
CLN3-249ENST00000636685 CORO1AP31146 461 aaKnown RBP15.24■□□□□ 0.03
CLN3-249ENST00000636685 RXRGP48443 463 aa15.24■□□□□ 0.03
CLN3-249ENST00000636685 KCNJ12Q14500 433 aa15.24■□□□□ 0.03
CLN3-249ENST00000636685 CDCP2Q5VXM1 449 aa15.24■□□□□ 0.03
CLN3-249ENST00000636685 MCTP1Q6DN14 999 aa15.24■□□□□ 0.03
CLN3-249ENST00000636685 ATG14Q6ZNE5 492 aa15.24■□□□□ 0.03
CLN3-249ENST00000636685 DDI1Q8WTU0 396 aa15.24■□□□□ 0.03
CLN3-249ENST00000636685 JAKMIP2Q96AA8 810 aa15.24■□□□□ 0.03
CLN3-249ENST00000636685 GZF1Q9H116 711 aaPredicted RBP15.24■□□□□ 0.03
CLN3-249ENST00000636685 MTG2Q9H4K7 406 aa15.24■□□□□ 0.03
CLN3-249ENST00000636685 FBRSQ9HAH7 460 aa15.24■□□□□ 0.03
CLN3-249ENST00000636685 NCKAP1Q9Y2A7 1128 aa15.24■□□□□ 0.03
CLN3-249ENST00000636685 PCDHB13Q9Y5F0 798 aa15.24■□□□□ 0.03
CLN3-249ENST00000636685 TLR4O00206 839 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms