RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 LY6KQ17RY6 165 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 INSCQ1MX18 579 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 ZNF750Q32MQ0 723 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 PLA1AQ53H76 456 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 DCAF12L1Q5VU92 463 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 RRAGBQ5VZM2 374 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 NXNQ6DKJ4 435 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 B3GNT9Q6UX72 402 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 DEF8Q6ZN54 512 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 DCDC5Q6ZRR9 648 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 ARHGAP30Q7Z6I6 1101 aaPredicted RBP1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 SPATA2LQ8IUW3 424 aaPredicted RBP1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 LIX1LQ8IVB5 337 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 P3H2Q8IVL5 708 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 YAF2Q8IY57 180 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 C16orf71Q8IYS4 520 aaPredicted RBP1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 SIRT6Q8N6T7 355 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 CCDC150Q8NCX0 1101 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 IL31RAQ8NI17 732 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 MPLKIPQ8TAP9 179 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 PARD3BQ8TEW8 1205 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 OSCP1Q8WVF1 389 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 IPCEF1Q8WWN9 437 aaPredicted RBP1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 SOCS4Q8WXH5 440 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 SPSB4Q96A44 273 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 TTC17Q96AE7 1141 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 LRRC46Q96FV0 321 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 SUCLG2Q96I99 432 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 HS6ST2Q96MM7 605 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 C22orf23Q9BZE7 217 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 ZNF518BQ9C0D4 1074 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 GBA2Q9HCG7 927 aaPredicted RBP1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 PNPLA8Q9NP80 782 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 SEMA4BQ9NPR2 832 aaPredicted RBP1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 A1CFQ9NQ94 594 aaKnown RBP1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 SELENONQ9NZV5 590 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 AFF4Q9UHB7 1163 aaKnown RBP1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 AMFRQ9UKV5 643 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 NDRG4Q9ULP0 352 aaKnown RBP1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 GABRQQ9UN88 632 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 USP22Q9UPT9 525 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 MED16Q9Y2X0 877 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 VWDEQ8N2E2 1590 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 REREQ9P2R6 1566 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 CCDC88AQ3V6T2 1871 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 PTPN23Q9H3S7 1636 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 CHD4Q14839 1912 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 RREB1Q92766 1687 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 KNDC1Q76NI1 1749 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 ARHGEF28Q8N1W1 1705 aaKnown RBP1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 UHRF1BP1LA0JNW5 1464 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 FANCAO15360 1455 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 EHBP1L1Q8N3D4 1523 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 ARAP3Q8WWN8 1544 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 FNDC1Q4ZHG4 1894 aaPredicted RBP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 UNC13BO14795 1591 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 NWD1Q149M9 1564 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 MAST1Q9Y2H9 1570 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 CLTCL1P53675 1640 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 AHDC1Q5TGY3 1603 aaPredicted RBP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 TMEM272A0A1B0GTI8 110 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 A6NNZ2 444 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 TBX3O15119 743 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 KPNA5O15131 536 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 CTIFO43310 598 aaKnown RBP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 SNX2O60749 519 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 CAND2O75155 1236 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 PIAS2O75928 621 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 MT-CO3P00414 261 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 FGAP02671 866 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 KRT18P05783 430 aaKnown RBP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 PARP1P09874 1014 aaKnown RBP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 MYCLP12524 364 aaPredicted RBP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 APEHP13798 732 aaKnown RBP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 IL6STP40189 918 aaPredicted RBP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 VIPR2P41587 438 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 PTDSS1P48651 473 aaKnown RBP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 CARSP49589 748 aaKnown RBP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 ENTPD1P49961 510 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 PDE6CP51160 858 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 AGFG1P52594 562 aaKnown RBP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 SUMO2P61956 95 aaKnown RBP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 RPS16P62249 146 aaKnown RBP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 FMO1Q01740 532 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 MYO1EQ12965 1108 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 IFIT5Q13325 482 aaKnown RBP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 STIM1Q13586 685 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 KEAP1Q14145 624 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 ARHGEF7Q14155 803 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 KCNB1Q14721 858 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 LARS2Q15031 903 aaKnown RBP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 POLD3Q15054 466 aaPredicted RBP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 SAFBQ15424 915 aaKnown RBP eCLIP1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 P3H1Q32P28 736 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 PTCHD3Q3KNS1 767 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 ODF3L2Q3SX64 289 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 LCE1FQ5T754 118 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 SWSAP1Q6NVH7 229 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 APOA5Q6Q788 366 aa1.31□□□□□ -2.2
SMARCB1-209ENST00000635578 MTHFD1LQ6UB35 978 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms