RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CHRDQ9H2X0 955 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 LMAN1LQ9HAT1 526 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 DDIT4Q9NX09 232 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 ARHGAP20Q9P2F6 1191 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 TLR6Q9Y2C9 796 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 ANKRD62A6NC57 917 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 SPECC1L-ADORA2AF8WAN1 911 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 IRAK2O43187 625 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 GREM1O60565 184 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 RTN2O75298 545 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 APOEP02649 317 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 FTLP02792 175 aaPredicted RBP18.81■□□□□ 0.6
CLN3-239ENST00000628023 CYP17A1P05093 508 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 CTHP32929 405 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 NME3Q13232 169 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 FZD5Q13467 585 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 ANO4Q32M45 955 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 MAMSTRQ6ZN01 415 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 Q6ZNB5 142 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 RALGPS2Q86X27 583 aaPredicted RBP18.81■□□□□ 0.6
CLN3-239ENST00000628023 GPR161Q8N6U8 529 aaKnown RBP18.81■□□□□ 0.6
CLN3-239ENST00000628023 ZBTB44Q8NCP5 570 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 C3orf20Q8ND61 904 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 RNF34Q969K3 372 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 PRMT8Q9NR22 394 aaPredicted RBP18.81■□□□□ 0.6
CLN3-239ENST00000628023 RRN3Q9NYV6 651 aa18.81■□□□□ 0.6
CLN3-239ENST00000628023 AGO1Q9UL18 857 aaKnown RBP18.81■□□□□ 0.6
CLN3-239ENST00000628023 OTOGLQ3ZCN5 2332 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 OTOL1A6NHN0 477 aaPredicted RBP18.8■□□□□ 0.6
CLN3-239ENST00000628023 M0QYT0 321 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 ADCY5O95622 1261 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 MOCS2O96007 188 aaPredicted RBP18.8■□□□□ 0.6
CLN3-239ENST00000628023 KLKB1P03952 638 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 ADH5P11766 374 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 KRT3P12035 628 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 RRM1P23921 792 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 FLT3P36888 993 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 EIF4A3P38919 411 aaKnown RBP18.8■□□□□ 0.6
CLN3-239ENST00000628023 SLC11A2P49281 568 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 CCR3P51677 355 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 GSCP56915 257 aaPredicted RBP18.8■□□□□ 0.6
CLN3-239ENST00000628023 PITX1P78337 314 aaPredicted RBP18.8■□□□□ 0.6
CLN3-239ENST00000628023 RING1Q06587 406 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 DHCR24Q15392 516 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 LY6G5CQ5SRR4 150 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 EMC1Q8N766 993 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 EXOC4Q96A65 974 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 ZNF653Q96CK0 615 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 TRIM11Q96F44 468 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 VCPIP1Q96JH7 1222 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 SPHK2Q9NRA0 654 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 TMEM59LQ9UK28 342 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 COL4A2P08572 1712 aa18.8■□□□□ 0.6
CLN3-239ENST00000628023 SHISA7A6NL88 538 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 ATMINO43313 823 aaPredicted RBP18.79■□□□□ 0.6
CLN3-239ENST00000628023 AKR1B10O60218 316 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 GJB6O95452 261 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 IGLV3-27P01718 113 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 SDC4P31431 198 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 GJA4P35212 333 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 CHKAP35790 457 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 GAD2Q05329 585 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 LRRC32Q14392 662 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 ARID5BQ14865 1188 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 ZC3H12AQ5D1E8 599 aaKnown RBP18.79■□□□□ 0.6
CLN3-239ENST00000628023 DCUN1D2Q6PH85 259 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 WDR59Q6PJI9 974 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 TPGS1Q6ZTW0 290 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 SND1Q7KZF4 910 aaKnown RBP eCLIP18.79■□□□□ 0.61e-7■■■□□ 15.8
CLN3-239ENST00000628023 DNAAF5Q86Y56 855 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 ADGRG2Q8IZP9 1017 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 NELL1Q92832 810 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 FCRL2Q96LA5 508 aaPredicted RBP18.79■□□□□ 0.6
CLN3-239ENST00000628023 RAB23Q9ULC3 237 aa18.79■□□□□ 0.6
CLN3-239ENST00000628023 A0A087X0T9 212 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 SSU72P8A0A1W2PR75 194 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 GOLGA6L6A8MZA4 724 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 LATS1O95835 1130 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 IGLV3-25P01717 112 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 FAM228BP0C875 321 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 MYBL1P10243 752 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 SLC2A3P11169 496 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 DESP17661 470 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 CDC25BP30305 580 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 CCR1P32246 355 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 DEUP1Q05D60 604 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 SLC25A52Q3SY17 297 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 CCDC122Q5T0U0 273 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 RHBDF2Q6PJF5 856 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 TSSK4Q6SA08 328 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 ARCQ7LC44 396 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 TMEM25Q86YD3 366 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 ZNF687Q8N1G0 1237 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 DCLK2Q8N568 766 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 JOSD2Q8TAC2 188 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 RXFP2Q8WXD0 754 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 BHMTQ93088 406 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 CCDC42Q96M95 316 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 CFAP57Q96MR6 1250 aa18.78■□□□□ 0.6
CLN3-239ENST00000628023 MCEEQ96PE7 176 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms