RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 TCF12Q99081 682 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 RTKNQ9BST9 563 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 PI4K2AQ9BTU6 479 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 SPATA16Q9BXB7 569 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 HDHD2Q9H0R4 259 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 TRNAU1APQ9NX07 287 aaKnown RBP9.13□□□□□ -0.95
VCL-206ENST00000623461 DNAJB4Q9UDY4 337 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 STOML2Q9UJZ1 356 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 PKP3Q9Y446 797 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 ADGRB2O60241 1585 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 IFT172Q9UG01 1749 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 CCDC182A6NF36 153 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 GJB6O95452 261 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 VAC14Q08AM6 782 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 PKN3Q6P5Z2 889 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 TTC23LQ6PF05 361 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 ZSCAN18Q8TBC5 510 aaPredicted RBP9.13□□□□□ -0.95
VCL-206ENST00000623461 ACSF2Q96CM8 615 aaPredicted RBP9.13□□□□□ -0.95
VCL-206ENST00000623461 DCUN1D1Q96GG9 259 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 NUAK2Q9H093 628 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 AP5M1Q9H0R1 490 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 RPRD1BQ9NQG5 326 aaKnown RBP9.13□□□□□ -0.95
VCL-206ENST00000623461 IFNA14P01570 189 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 MSH3P20585 1137 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 RGS7P49802 495 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 RPL14P50914 215 aaKnown RBP9.13□□□□□ -0.95
VCL-206ENST00000623461 BNIP2Q12982 314 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 TSNQ15631 228 aaKnown RBP9.13□□□□□ -0.95
VCL-206ENST00000623461 CLNKQ7Z7G1 428 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 PRRG3Q9BZD7 231 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 JMJD4Q9H9V9 463 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 TRIM39Q9HCM9 518 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 NYAP2Q9P242 653 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 RASA1P20936 1047 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 BMP6P22004 513 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 GARTP22102 1010 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 NUP62P37198 522 aaPredicted RBP9.13□□□□□ -0.95
VCL-206ENST00000623461 SUPT20HL1Q3ZLR7 823 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 TMEM119Q4V9L6 283 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 FAM43BQ6ZT52 329 aaPredicted RBP9.13□□□□□ -0.95
VCL-206ENST00000623461 ZNF572Q7Z3I7 529 aaPredicted RBP9.13□□□□□ -0.95
VCL-206ENST00000623461 TRABD2AQ86V40 505 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 ZNF341Q9BYN7 854 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 HPS4Q9NQG7 708 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 RNF112Q9ULX5 631 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 USP18Q9UMW8 372 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 CLRN2A0PK11 232 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 MED24O75448 989 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 PDGFRBP09619 1106 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 TPBGLP0DKB5 382 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 AVPR1AP37288 418 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 BTBD8Q5XKL5 378 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 ATG14Q6ZNE5 492 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 ACTRT2Q8TDY3 377 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 SEPHS2Q99611 448 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 DGCR6LQ9BY27 220 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 KCTD10Q9H3F6 313 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 ARL8BQ9NVJ2 186 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 TMCC3Q9ULS5 477 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 AGAP1Q9UPQ3 857 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 PTPRUQ92729 1446 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 SPDYE5A6NIY4 337 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 TK2O00142 265 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 CYP27B1O15528 508 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 HSMCR30P0CW71 290 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 ETS1P14921 441 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 POLR2EP19388 210 aaKnown RBP9.13□□□□□ -0.95
VCL-206ENST00000623461 SPDYE7PQ495Y7 208 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 ECHDC2Q86YB7 292 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 ADHFE1Q8IWW8 467 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 DRAXINQ8NBI3 349 aaPredicted RBP9.13□□□□□ -0.95
VCL-206ENST00000623461 IPMKQ8NFU5 416 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 SIK2Q9H0K1 926 aa9.13□□□□□ -0.95
VCL-206ENST00000623461 SNAP23O00161 211 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 PGK2P07205 417 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 SQLEQ14534 574 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 KCNV1Q6PIU1 500 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 TCAIMQ8N3R3 496 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 SERHL2Q9H4I8 314 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 SERHLQ9NQF3 203 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 DYRK4Q9NR20 520 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 CHADO15335 359 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 HS6ST1O60243 411 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 ARIH2O95376 493 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 HOXD10P28358 340 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 LRRC74AQ0VAA2 488 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 MAD2L1Q13257 205 aaPredicted RBP9.12□□□□□ -0.95
VCL-206ENST00000623461 MRNIPQ6NTE8 343 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 ZNF720Q7Z2F6 126 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 TTC30BQ8N4P2 665 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 FITM2Q8N6M3 262 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 BAP1Q92560 729 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 RNF145Q96MT1 663 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 MXRA8Q9BRK3 442 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 RAVER2Q9HCJ3 691 aaKnown RBP9.12□□□□□ -0.95
VCL-206ENST00000623461 JPH1Q9HDC5 661 aaPredicted RBP9.12□□□□□ -0.95
VCL-206ENST00000623461 SAGE2PA6NJ88 616 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 PTGES3LE9PB15 166 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 BAIAP3O94812 1187 aa9.12□□□□□ -0.95
VCL-206ENST00000623461 PKNOX1P55347 436 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms