RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 HTR3CQ8WXA8 447 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 AGAP3Q96P47 875 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 DHRS4Q9BTZ2 278 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 KDM4CQ9H3R0 1056 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 POPDC2Q9HBU9 364 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.98□□□□□ -0.654e-7■■■□□ 17.6
CUX1-221ENST00000622516 TRIM33Q9UPN9 1127 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 Q9Y3F1 56 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 USP3Q9Y6I4 520 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 PRPF4O43172 522 aaKnown RBP eCLIP10.98□□□□□ -0.653e-6■■□□□ 11.6
CUX1-221ENST00000622516 TOP3BO95985 862 aaKnown RBP10.98□□□□□ -0.65
CUX1-221ENST00000622516 HNRNPH1P31943 449 aaKnown RBP10.98□□□□□ -0.65
CUX1-221ENST00000622516 SESN2P58004 480 aaPredicted RBP10.98□□□□□ -0.65
CUX1-221ENST00000622516 CACNB2Q08289 660 aaPredicted RBP10.98□□□□□ -0.65
CUX1-221ENST00000622516 MTFR1Q15390 333 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 ANKRD20A2Q5SQ80 823 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 ANKRD20A1Q5TYW2 823 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 ANKRD20A3Q5VUR7 823 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 CES3Q6UWW8 571 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 UNC5AQ6ZN44 842 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 STRADAQ7RTN6 431 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 TBC1D1Q86TI0 1168 aaPredicted RBP10.98□□□□□ -0.65
CUX1-221ENST00000622516 FAM35AQ86V20 835 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 CDKL3Q8IVW4 592 aaPredicted RBP10.98□□□□□ -0.65
CUX1-221ENST00000622516 KIF2BQ8N4N8 673 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 LRRC8CQ8TDW0 803 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 TFB1MQ8WVM0 346 aaKnown RBP10.98□□□□□ -0.65
CUX1-221ENST00000622516 PTPRN2Q92932 1015 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 FAM111AQ96PZ2 611 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 NPY6RQ99463 290 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 SLC13A1Q9BZW2 595 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 SLC40A1Q9NP59 571 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 NUDT5Q9UKK9 219 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.97□□□□□ -0.65
CUX1-221ENST00000622516 NDC80O14777 642 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 USP12O75317 370 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 CPP00450 1065 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 IGHA2P01877 340 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 NOS2P35228 1153 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 GJA9P57773 515 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 CDHR3Q6ZTQ4 885 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 SERINC5Q86VE9 423 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 ECHDC2Q86YB7 292 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 RTP4Q96DX8 246 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 P2RY11Q96G91 374 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 PRDM12Q9H4Q4 367 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 XPNPEP3Q9NQH7 507 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 TMLHEQ9NVH6 421 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 DDIT4Q9NX09 232 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 SMG5Q9UPR3 1016 aaKnown RBP10.97□□□□□ -0.65
CUX1-221ENST00000622516 TTLL3Q9Y4R7 772 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 WDR27A2RRH5 827 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 FAM155AB1AL88 458 aaPredicted RBP10.97□□□□□ -0.65
CUX1-221ENST00000622516 TRIM49D1C9J1S8 452 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 RNF103O00237 685 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 LPXNO60711 386 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 SLC10A3P09131 477 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 UPP1Q16831 310 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 RSPH3Q86UC2 560 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 BANPQ8N9N5 519 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 COLGALT1Q8NBJ5 622 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 SCAMP5Q8TAC9 235 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 ZNF75CPQ92670 426 aaPredicted RBP10.97□□□□□ -0.65
CUX1-221ENST00000622516 TTC17Q96AE7 1141 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 ADAM2Q99965 735 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 TRPM7Q96QT4 1865 aa10.97□□□□□ -0.65
CUX1-221ENST00000622516 CFAP69A5D8W1 941 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 EEF2KO00418 725 aaKnown RBP10.96□□□□□ -0.65
CUX1-221ENST00000622516 GCATO75600 419 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 CSH1P0DML2 217 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 CSH2P0DML3 217 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 DAOAP59103 153 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 MROH9Q5TGP6 573 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 MFSD14CQ5VZR4 134 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 LRRTM3Q86VH5 581 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 ANKLE1Q8NAG6 615 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 SLC44A1Q8WWI5 657 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 MYLPFQ96A32 169 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 SIGLEC10Q96LC7 697 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 QKIQ96PU8 341 aaKnown RBP eCLIP10.96□□□□□ -0.656e-15■■■■□ 22.1
CUX1-221ENST00000622516 RTP3Q9BQQ7 232 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 SPC25Q9HBM1 224 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 KLHL14Q9P2G3 628 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 DCTN4Q9UJW0 460 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 STAP1Q9ULZ2 295 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 NOD1Q9Y239 953 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 ARL2BPQ9Y2Y0 163 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 SCN10AQ9Y5Y9 1956 aa10.96□□□□□ -0.65
CUX1-221ENST00000622516 DAB1O75553 588 aa10.96□□□□□ -0.66
CUX1-221ENST00000622516 C1QAP02745 245 aa10.96□□□□□ -0.66
CUX1-221ENST00000622516 OR4Q2P0C623 313 aa10.96□□□□□ -0.66
CUX1-221ENST00000622516 NEFHP12036 1026 aa10.96□□□□□ -0.66
CUX1-221ENST00000622516 PSMB4P28070 264 aa10.96□□□□□ -0.66
CUX1-221ENST00000622516 PDK4Q16654 411 aa10.96□□□□□ -0.66
CUX1-221ENST00000622516 LACTB2Q53H82 288 aaPredicted RBP10.96□□□□□ -0.66
CUX1-221ENST00000622516 SMYD5Q6GMV2 418 aa10.96□□□□□ -0.66
CUX1-221ENST00000622516 RFX8Q6ZV50 586 aa10.96□□□□□ -0.66
CUX1-221ENST00000622516 LRRC6Q86X45 466 aa10.96□□□□□ -0.66
CUX1-221ENST00000622516 MECRQ9BV79 373 aa10.96□□□□□ -0.66
CUX1-221ENST00000622516 NPHS2Q9NP85 383 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms