RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 FRMD1Q8N878 549 aa12.45□□□□□ -0.42
UPF3B-204ENST00000619445 TRIML1Q8N9V2 468 aa12.45□□□□□ -0.42
UPF3B-204ENST00000619445 ENGASEQ8NFI3 743 aa12.45□□□□□ -0.42
UPF3B-204ENST00000619445 PIWIL1Q96J94 861 aaKnown RBP12.45□□□□□ -0.42
UPF3B-204ENST00000619445 HSPA12BQ96MM6 686 aa12.45□□□□□ -0.42
UPF3B-204ENST00000619445 TRIM62Q9BVG3 475 aa12.45□□□□□ -0.42
UPF3B-204ENST00000619445 STOML2Q9UJZ1 356 aa12.45□□□□□ -0.42
UPF3B-204ENST00000619445 PLA2G4CQ9UP65 541 aa12.45□□□□□ -0.42
UPF3B-204ENST00000619445 FAM208BQ5VWN6 2430 aa12.45□□□□□ -0.42
UPF3B-204ENST00000619445 O00370 1275 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 IRAK2O43187 625 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 FBXO21O94952 628 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 HMBSP08397 361 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 ACADMP11310 421 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 ADIGQ0VDE8 80 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 SEMA3BQ13214 749 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 CNGA2Q16280 664 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 FUT11Q495W5 492 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 CCDC40Q4G0X9 1142 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 MPP7Q5T2T1 576 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 BSPRYQ5W0U4 402 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 NUGGCQ68CJ6 796 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 SMYD5Q6GMV2 418 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 FMNL3Q8IVF7 1028 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 RGL4Q8IZJ4 473 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 PRCCQ92733 491 aaPredicted RBP12.44□□□□□ -0.42
UPF3B-204ENST00000619445 SIPA1Q96FS4 1042 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 HSFY1Q96LI6 401 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 DDX50Q9BQ39 737 aaKnown RBP12.44□□□□□ -0.42
UPF3B-204ENST00000619445 CIPCQ9C0C6 399 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 ITM2CQ9NQX7 267 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 USP36Q9P275 1121 aaKnown RBP12.44□□□□□ -0.42
UPF3B-204ENST00000619445 IGF2RP11717 2491 aa12.44□□□□□ -0.42
UPF3B-204ENST00000619445 TYW5A2RUC4 315 aaKnown RBP12.43□□□□□ -0.42
UPF3B-204ENST00000619445 IGLV3-19P01714 112 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 ATP5BP06576 529 aaKnown RBP12.43□□□□□ -0.42
UPF3B-204ENST00000619445 PROS1P07225 676 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 IL12RB1P42701 662 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 SLC11A2P49281 568 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 GCNT1Q02742 428 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 ZBTB16Q05516 673 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 RING1Q06587 406 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 MEA1Q16626 185 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 GEN1Q17RS7 908 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 MSANTD2Q6P1R3 559 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 TMEM270Q6UE05 265 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 SERPINA13PQ6UXR4 307 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 PIP4P1Q86T03 277 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 TMPRSS6Q8IU80 811 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 DNASE2BQ8WZ79 361 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 AZIN2Q96A70 460 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 TMA16Q96EY4 203 aaKnown RBP12.43□□□□□ -0.42
UPF3B-204ENST00000619445 FAM81BQ96LP2 452 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 NUP58Q9BVL2 599 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 GTPBP2Q9BX10 602 aaKnown RBP12.43□□□□□ -0.42
UPF3B-204ENST00000619445 RTN4Q9NQC3 1192 aaKnown RBP12.43□□□□□ -0.42
UPF3B-204ENST00000619445 DNAAF2Q9NVR5 837 aaKnown RBP12.43□□□□□ -0.42
UPF3B-204ENST00000619445 WSB2Q9NYS7 404 aaPredicted RBP12.43□□□□□ -0.42
UPF3B-204ENST00000619445 PCDHB4Q9Y5E5 795 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 RAD54BQ9Y620 910 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 ATXN2Q99700 1313 aaKnown RBP12.43□□□□□ -0.42
UPF3B-204ENST00000619445 PCDH15Q96QU1 1955 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 A0A1B0GTW7 788 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 MEI4A8MW99 385 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 GIPC1O14908 333 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 FGFR1OPO95684 399 aaKnown RBP12.43□□□□□ -0.42
UPF3B-204ENST00000619445 C7P10643 843 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 NCAM1P13591 858 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 DAOAP59103 153 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 SFSWAPQ12872 951 aaKnown RBP12.43□□□□□ -0.42
UPF3B-204ENST00000619445 FOXC1Q12948 553 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 NNTQ13423 1086 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 ZNF234Q14588 700 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 PLEKHG6Q3KR16 790 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 PKDCCQ504Y2 493 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 IL27RAQ6UWB1 636 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 BHLHA9Q7RTU4 235 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 SLC41A1Q8IVJ1 513 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 CCDC117Q8IWD4 279 aaPredicted RBP12.43□□□□□ -0.42
UPF3B-204ENST00000619445 AHI1Q8N157 1196 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 PPM1KQ8N3J5 372 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 MINDY1Q8N5J2 469 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 UBR7Q8N806 425 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.43□□□□□ -0.42
UPF3B-204ENST00000619445 DEFB124Q8NES8 71 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 SLC35F5Q8WV83 523 aa12.43□□□□□ -0.42
UPF3B-204ENST00000619445 TOE1Q96GM8 510 aaKnown RBP12.43□□□□□ -0.42
UPF3B-204ENST00000619445 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.43□□□□□ -0.42
UPF3B-204ENST00000619445 KNL1Q8NG31 2342 aa12.42□□□□□ -0.42
UPF3B-204ENST00000619445 ADAMTS9Q9P2N4 1935 aa12.42□□□□□ -0.42
UPF3B-204ENST00000619445 YJEFN3A6XGL0 299 aa12.42□□□□□ -0.42
UPF3B-204ENST00000619445 WASH3PC4AMC7 463 aa12.42□□□□□ -0.42
UPF3B-204ENST00000619445 E7ENQ6 273 aa12.42□□□□□ -0.42
UPF3B-204ENST00000619445 LTFP02788 710 aa12.42□□□□□ -0.42
UPF3B-204ENST00000619445 EPHX1P07099 455 aa12.42□□□□□ -0.42
UPF3B-204ENST00000619445 HOXD9P28356 352 aaPredicted RBP12.42□□□□□ -0.42
UPF3B-204ENST00000619445 ACADSBP45954 432 aa12.42□□□□□ -0.42
UPF3B-204ENST00000619445 TPMTP51580 245 aa12.42□□□□□ -0.42
UPF3B-204ENST00000619445 PMS1P54277 932 aaKnown RBP12.42□□□□□ -0.42
UPF3B-204ENST00000619445 LRMPQ12912 555 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms