RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 RNF157Q96PX1 679 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.29□□□□□ -0.12
CIITA-213ENST00000618327 LRRC19Q9H756 370 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 NT5MQ9NPB1 228 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 UBP1Q9NZI7 540 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 MOSPD1Q9UJG1 213 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 VPS28Q9UK41 221 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 FSCN2O14926 492 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 KRT4P19013 534 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 ATP4AP20648 1035 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 LILRA4P59901 499 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 PDAP1Q13442 181 aaKnown RBP14.29□□□□□ -0.12
CIITA-213ENST00000618327 FAM187BQ17R55 369 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 MARC1Q5VT66 337 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 EGFL8Q99944 293 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 B3GNT5Q9BYG0 378 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 C10orf88Q9H8K7 445 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 PRDM16Q9HAZ2 1276 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 TSR3Q9UJK0 312 aaKnown RBP14.29□□□□□ -0.12
CIITA-213ENST00000618327 COG5Q9UP83 839 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 RNF103O00237 685 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 CHRNB2P17787 502 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 PLD1Q13393 1074 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 TARBP2Q15633 366 aaKnown RBP14.29□□□□□ -0.12
CIITA-213ENST00000618327 ZC3H12AQ5D1E8 599 aaKnown RBP14.29□□□□□ -0.12
CIITA-213ENST00000618327 TAPT1Q6NXT6 567 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 SPATA21Q7Z572 469 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 MDM1Q8TC05 714 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 TASP1Q9H6P5 420 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 ANLNQ9NQW6 1124 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 GRID1Q9ULK0 1009 aa14.29□□□□□ -0.12
CIITA-213ENST00000618327 NT5C1B-RDH14C9J2C7 533 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 RIPK2O43353 540 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 GNRH1P01148 92 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 OR1E1P30953 314 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 CLCNKBP51801 687 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 USP41Q3LFD5 358 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 FSCBQ5H9T9 825 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 LVRNQ6Q4G3 990 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 BBS12Q6ZW61 710 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 SAPCD2Q86UD0 394 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 EIF1ADQ8N9N8 165 aaKnown RBP14.28□□□□□ -0.12
CIITA-213ENST00000618327 CEP70Q8NHQ1 597 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 TFAP2BQ92481 460 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 NFKBIZQ9BYH8 718 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 CACYBPQ9HB71 228 aaKnown RBP14.28□□□□□ -0.12
CIITA-213ENST00000618327 UXTQ9UBK9 157 aaPredicted RBP14.28□□□□□ -0.12
CIITA-213ENST00000618327 DPP7Q9UHL4 492 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 hCG_1818297A0A087WSY0 165 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 ARL5CA6NH57 179 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 IGF2BP3O00425 579 aaKnown RBP eCLIP14.28□□□□□ -0.12
CIITA-213ENST00000618327 LIASO43766 372 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 LMNAP02545 664 aaKnown RBP14.28□□□□□ -0.12
CIITA-213ENST00000618327 ZSCAN5DPP0CG00 497 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 CYP2C18P33260 490 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 IRAK1P51617 712 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 ART3Q13508 389 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 ARHGEF7Q14155 803 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 POLD3Q15054 466 aaPredicted RBP14.28□□□□□ -0.12
CIITA-213ENST00000618327 TTC30AQ86WT1 665 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 XYLT1Q86Y38 959 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 DCUN1D1Q96GG9 259 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 FAXDC2Q96IV6 333 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 MRPL17Q9NRX2 175 aaKnown RBP14.28□□□□□ -0.12
CIITA-213ENST00000618327 SLC39A10Q9ULF5 831 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 DRG1Q9Y295 367 aaKnown RBP14.28□□□□□ -0.12
CIITA-213ENST00000618327 CBX4O00257 560 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 HAUS5O94927 633 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 NUP93Q8N1F7 819 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 PAFAH2Q99487 392 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 FICDQ9BVA6 458 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 TSSK1BQ9BXA7 367 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 EMILIN2Q9BXX0 1053 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 VANGL2Q9ULK5 521 aa14.28□□□□□ -0.12
CIITA-213ENST00000618327 GNGT2O14610 69 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 STX7O15400 261 aaKnown RBP14.27□□□□□ -0.12
CIITA-213ENST00000618327 DNAJC6O75061 913 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 CYP1A1P04798 512 aaPredicted RBP14.27□□□□□ -0.12
CIITA-213ENST00000618327 RENBPP51606 427 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 KDM7AQ6ZMT4 941 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 USP13Q92995 863 aaPredicted RBP14.27□□□□□ -0.12
CIITA-213ENST00000618327 NRBF2Q96F24 287 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 TRHDEQ9UKU6 1024 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 E2F8A0AVK6 867 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 GYG2O15488 501 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 GFAPP14136 432 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 ELK3P41970 407 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 STX3Q13277 289 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 DPYSL3Q14195 570 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 KRT33BQ14525 404 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 NPNTQ6UXI9 565 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 ULK4Q96C45 1275 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 SERPINI1Q99574 410 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 TRIM54Q9BYV2 358 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 HACD3Q9P035 362 aa14.27□□□□□ -0.12
CIITA-213ENST00000618327 DAB1O75553 588 aa14.27□□□□□ -0.13
CIITA-213ENST00000618327 EEF1DP29692 281 aaKnown RBP14.27□□□□□ -0.13
CIITA-213ENST00000618327 ATP5C1P36542 298 aaKnown RBP14.27□□□□□ -0.13
CIITA-213ENST00000618327 CASP2P42575 452 aa14.27□□□□□ -0.13
CIITA-213ENST00000618327 PURAQ00577 322 aaKnown RBP14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms