RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 SMARCAL1Q9NZC9 954 aa12.17□□□□□ -0.46
PDPN-211ENST00000617617 MARCH2Q9P0N8 246 aa12.17□□□□□ -0.46
PDPN-211ENST00000617617 TCRBV7S2A1N4TA0A589 114 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 CD48P09326 243 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 TBX4P57082 545 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 XRCC4Q13426 336 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 PAFAH1B3Q15102 231 aaKnown RBP12.16□□□□□ -0.46
PDPN-211ENST00000617617 NUGGCQ68CJ6 796 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 PCDH19Q8TAB3 1148 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 SLC35B2Q8TB61 432 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 UBXN4Q92575 508 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 CSPG4P5Q96PW8 444 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 KLF16Q9BXK1 252 aaPredicted RBP12.16□□□□□ -0.46
PDPN-211ENST00000617617 TKTL2Q9H0I9 626 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 CWC15Q9P013 229 aaKnown RBP12.16□□□□□ -0.46
PDPN-211ENST00000617617 FEZ2Q9UHY8 353 aaPredicted RBP12.16□□□□□ -0.46
PDPN-211ENST00000617617 RAB21Q9UL25 225 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 TNRC18O15417 2968 aaPredicted RBP12.16□□□□□ -0.46
PDPN-211ENST00000617617 NYNRINQ9P2P1 1898 aaKnown RBP12.16□□□□□ -0.46
PDPN-211ENST00000617617 IGLV3-10A0A075B6K4 115 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 COILP38432 576 aaPredicted RBP12.16□□□□□ -0.46
PDPN-211ENST00000617617 PTGIRP43119 386 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 CDR1P51861 262 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 SLC7A9P82251 487 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 LMNB2Q03252 620 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 LRIT3Q3SXY7 679 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 WDR93Q6P2C0 686 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 UNC45BQ8IWX7 931 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 ATP6V0D2Q8N8Y2 350 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 CCDC26Q8TAB7 109 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 BTN2A3PQ96KV6 586 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 SLC28A3Q9HAS3 691 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 MAN1C1Q9NR34 630 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 NR2E1Q9Y466 385 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 CHD9Q3L8U1 2897 aa12.16□□□□□ -0.46
PDPN-211ENST00000617617 PI4K2BG5E9Z4 385 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 DCLK1O15075 740 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 FGF10O15520 208 aaPredicted RBP12.15□□□□□ -0.46
PDPN-211ENST00000617617 LIASO43766 372 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 ITGAVP06756 1048 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 POU3F3P20264 500 aaPredicted RBP12.15□□□□□ -0.46
PDPN-211ENST00000617617 ARL4AP40617 200 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 CCDC70Q6NSX1 233 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 MAATS1Q7Z4T9 603 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 PLD5Q8N7P1 536 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 GRK7Q8WTQ7 553 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 TIFAQ96CG3 184 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 PRMT1Q99873 361 aaKnown RBP12.15□□□□□ -0.46
PDPN-211ENST00000617617 FAM129AQ9BZQ8 928 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 DHX35Q9H5Z1 703 aaKnown RBP12.15□□□□□ -0.46
PDPN-211ENST00000617617 KLHL11Q9NVR0 708 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 SFMBT1Q9UHJ3 866 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 NEU2Q9Y3R4 380 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 APOL1O14791 398 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 COCHO43405 550 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 XYLBO75191 536 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 MCM3P25205 808 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 DRG2P55039 364 aaKnown RBP12.15□□□□□ -0.46
PDPN-211ENST00000617617 MLLT6P55198 1093 aaPredicted RBP12.15□□□□□ -0.46
PDPN-211ENST00000617617 COG7P83436 770 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 ADCY2Q08462 1091 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 IFRD2Q12894 506 aaPredicted RBP12.15□□□□□ -0.46
PDPN-211ENST00000617617 NOMO1Q15155 1222 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 OASLQ15646 514 aaKnown RBP12.15□□□□□ -0.46
PDPN-211ENST00000617617 C10orf120Q5SQS8 335 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 RFX8Q6ZV50 586 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 FAM217AQ8IXS0 508 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 ADAM32Q8TC27 787 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.15□□□□□ -0.46
PDPN-211ENST00000617617 EPAS1Q99814 870 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 AP1M1Q9BXS5 423 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 PRKD2Q9BZL6 878 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 CCSER2Q9H7U1 834 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 ANKZF1Q9H8Y5 726 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 SLC12A6Q9UHW9 1150 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 TRANK1O15050 2925 aa12.15□□□□□ -0.46
PDPN-211ENST00000617617 APOEP02649 317 aa12.15□□□□□ -0.47
PDPN-211ENST00000617617 PTPN2P17706 415 aa12.15□□□□□ -0.47
PDPN-211ENST00000617617 GJC1P36383 396 aa12.15□□□□□ -0.47
PDPN-211ENST00000617617 ZNF33AQ06730 810 aa12.15□□□□□ -0.47
PDPN-211ENST00000617617 PRSS36Q5K4E3 855 aa12.15□□□□□ -0.47
PDPN-211ENST00000617617 BZW1Q7L1Q6 419 aaKnown RBP12.15□□□□□ -0.47
PDPN-211ENST00000617617 ZFRQ96KR1 1074 aaKnown RBP12.15□□□□□ -0.47
PDPN-211ENST00000617617 MAK16Q9BXY0 300 aaKnown RBP12.15□□□□□ -0.47
PDPN-211ENST00000617617 ASAH2Q9NR71 780 aa12.15□□□□□ -0.47
PDPN-211ENST00000617617 ARHGEF4Q9NR80 690 aa12.15□□□□□ -0.47
PDPN-211ENST00000617617 EPOPA6NHQ4 379 aa12.14□□□□□ -0.47
PDPN-211ENST00000617617 DRGXA6NNA5 263 aa12.14□□□□□ -0.47
PDPN-211ENST00000617617 HACD1B0YJ81 288 aa12.14□□□□□ -0.47
PDPN-211ENST00000617617 CST8O60676 142 aa12.14□□□□□ -0.47
PDPN-211ENST00000617617 PAGE1O75459 146 aa12.14□□□□□ -0.47
PDPN-211ENST00000617617 KRT10P13645 584 aa12.14□□□□□ -0.47
PDPN-211ENST00000617617 VCPP55072 806 aaKnown RBP12.14□□□□□ -0.47
PDPN-211ENST00000617617 EFEMP1Q12805 493 aa12.14□□□□□ -0.47
PDPN-211ENST00000617617 TAF12Q16514 161 aa12.14□□□□□ -0.47
PDPN-211ENST00000617617 GAREM2Q75VX8 874 aa12.14□□□□□ -0.47
PDPN-211ENST00000617617 RFX6Q8HWS3 928 aa12.14□□□□□ -0.47
PDPN-211ENST00000617617 ATL2Q8NHH9 583 aa12.14□□□□□ -0.47
PDPN-211ENST00000617617 ACSF2Q96CM8 615 aaPredicted RBP12.14□□□□□ -0.47
PDPN-211ENST00000617617 RTP4Q96DX8 246 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms