RNA–Protein interactions for RNA: ENST00000616010.4

CCND3-223, Transcript of cyclin D3, human

TSL 5 BASIC

Gene CCND3, Length 2,047 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCND3-223	ENST00000616010	HCFC1R1	Q9NWW0	138 aa		24.29	■■□□□ 1.48
CCND3-223	ENST00000616010	CWC15	Q9P013	229 aa	Known RBP	24.29	■■□□□ 1.48
CCND3-223	ENST00000616010	FAM72C	H0Y354	149 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	HOXA9	P31269	272 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	DUSP6	Q16828	381 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	ZNF697	Q5TEC3	545 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	FAM72A	Q5TYM5	149 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	FAM72D	Q6L9T8	149 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	KLHDC10	Q6PID8	442 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	BBS12	Q6ZW61	710 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	FAM72B	Q86X60	149 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	FAM118B	Q9BPY3	351 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	TMEM51	Q9NW97	253 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	DPP7	Q9UHL4	492 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	SNX10	Q9Y5X0	201 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	DENND4C	Q5VZ89	1909 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	KCNU1	A8MYU2	1149 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	ZNF487	B1APH4	448 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	PAGE1	O75459	146 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	APOE	P02649	317 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	SLC2A3	P11169	496 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	MYL4	P12829	197 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	MRPS25	P82663	173 aa	Known RBP	24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	CYP4F8	P98187	520 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	C8orf74	Q6P047	294 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	PCDH19	Q8TAB3	1148 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	HDAC7	Q8WUI4	952 aa		24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	MRPL38	Q96DV4	380 aa	Known RBP	24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	XPO7	Q9UIA9	1087 aa	Known RBP	24.28	■■□□□ 1.48
CCND3-223	ENST00000616010	RHOXF2B	P0C7M4	288 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	CYP1B1	Q16678	543 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	MAGOHB	Q96A72	148 aa	Known RBP	24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	GCNA	Q96QF7	691 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	RHOXF2	Q9BQY4	288 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	SIK2	Q9H0K1	926 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	RCOR3	Q9P2K3	495 aa	Predicted RBP	24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	OR12D3	Q9UGF7	316 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	DOCK6	Q96HP0	2047 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010		A0A1W2PRU2	124 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010		H3BRJ5	948 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	EEF2K	O00418	725 aa	Known RBP	24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	IGLV3-27	P01718	113 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	HNRNPA1	P09651	372 aa	Known RBP eCLIP	24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	CDC25C	P30307	473 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	SEMA3B	Q13214	749 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	TFDP2	Q14188	446 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	ELMSAN1	Q6PJG2	1045 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	PQLC3	Q8N755	202 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	MRPS31	Q92665	395 aa	Known RBP	24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	HAPLN3	Q96S86	360 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	RNF38	Q9H0F5	515 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	ATXN3L	Q9H3M9	355 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	ZDHHC7	Q9NXF8	308 aa		24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	SAE1	Q9UBE0	346 aa	Predicted RBP	24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	HBS1L	Q9Y450	684 aa	Known RBP	24.27	■■□□□ 1.48
CCND3-223	ENST00000616010	XYLB	O75191	536 aa		24.26	■■□□□ 1.47
CCND3-223	ENST00000616010	KPNA1	P52294	538 aa	Predicted RBP	24.26	■■□□□ 1.47
CCND3-223	ENST00000616010	TPI1	P60174	286 aa		24.26	■■□□□ 1.47
CCND3-223	ENST00000616010	RING1	Q06587	406 aa		24.26	■■□□□ 1.47
CCND3-223	ENST00000616010	ELF2	Q15723	593 aa		24.26	■■□□□ 1.47
CCND3-223	ENST00000616010	TXNDC8	Q6A555	127 aa		24.26	■■□□□ 1.47
CCND3-223	ENST00000616010	C12orf50	Q8NA57	414 aa	Predicted RBP	24.26	■■□□□ 1.47
CCND3-223	ENST00000616010	EPAS1	Q99814	870 aa		24.26	■■□□□ 1.47
CCND3-223	ENST00000616010	DCLK3	Q9C098	648 aa		24.26	■■□□□ 1.47
CCND3-223	ENST00000616010	EPC1	Q9H2F5	836 aa		24.26	■■□□□ 1.47
CCND3-223	ENST00000616010	NRG2	O14511	850 aa	Predicted RBP	24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	APOL1	O14791	398 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	GJA1	P17302	382 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	CHRNA3	P32297	505 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	TERF1	P54274	439 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	TUBB4B	P68371	445 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	SNX1	Q13596	522 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	TTC27	Q6P3X3	843 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	RFX8	Q6ZV50	586 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	LRRC1	Q9BTT6	524 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	OSBPL2	Q9H1P3	480 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	ARHGEF4	Q9NR80	690 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	DNMT3B	Q9UBC3	853 aa	Known RBP	24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	AMACR	Q9UHK6	382 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	KCNQ1	P51787	676 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	SLC9A4	Q6AI14	798 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	CCDC137	Q6PK04	289 aa	Known RBP	24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	PLD5	Q8N7P1	536 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	SLC22A12	Q96S37	553 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	SLITRK6	Q9H5Y7	841 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	LRRC19	Q9H756	370 aa		24.25	■■□□□ 1.47
CCND3-223	ENST00000616010	APOC4-APOC2	K7ER74	178 aa		24.24	■■□□□ 1.47
CCND3-223	ENST00000616010	LRIG2	O94898	1065 aa		24.24	■■□□□ 1.47
CCND3-223	ENST00000616010	APOC2	P02655	101 aa		24.24	■■□□□ 1.47
CCND3-223	ENST00000616010	MBL2	P11226	248 aa	Predicted RBP	24.24	■■□□□ 1.47
CCND3-223	ENST00000616010	PECAM1	P16284	738 aa	Predicted RBP	24.24	■■□□□ 1.47
CCND3-223	ENST00000616010	PTPN2	P17706	415 aa		24.24	■■□□□ 1.47
CCND3-223	ENST00000616010	AMPD1	P23109	780 aa		24.24	■■□□□ 1.47
CCND3-223	ENST00000616010	CCR2	P41597	374 aa		24.24	■■□□□ 1.47
CCND3-223	ENST00000616010	PIK3R6	Q5UE93	754 aa		24.24	■■□□□ 1.47
CCND3-223	ENST00000616010	NUGGC	Q68CJ6	796 aa		24.24	■■□□□ 1.47
CCND3-223	ENST00000616010	CCDC70	Q6NSX1	233 aa		24.24	■■□□□ 1.47
CCND3-223	ENST00000616010	PDZD4	Q76G19	769 aa	Predicted RBP	24.24	■■□□□ 1.47
CCND3-223	ENST00000616010	ATP6V0D2	Q8N8Y2	350 aa		24.24	■■□□□ 1.47
CCND3-223	ENST00000616010	VN1R2	Q8NFZ6	395 aa		24.24	■■□□□ 1.47

Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms